Showing : biocmanager • reset
1
vote
3
replies
579
views
Unable to install any Bioconductor package with new R 4.4.1 - path nor writable - PLEASE HELP
pathnotwritable BiocManager LEA
updated 24 days ago by 67k • written 26 days ago by ▴ 10
0
votes
0
replies
473
views
News: CRAN downtime
BiocManager Bioconductor
11 months ago shepherl 4.1k
5
votes
2
replies
1.2k
views
can't install DESeq2 ("unable to access index for repository")
biocmanager DESeq2
14 months ago Alessia ▴ 40
3
votes
5
replies
1.6k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 15 months ago by 6.7k • written 15 months ago by ▴ 20
0
votes
4
replies
1.2k
views
Unable to install BiocManager
Biocmanager R
updated 19 months ago by ▴ 50 • written 19 months ago by • 0
0
votes
2
replies
4.6k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 22 months ago by 67k • written 22 months ago by • 0
2
votes
4
replies
2.8k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 23 months ago by • 0
0
votes
2
replies
991
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 23 months ago by • 0
1
vote
3
replies
6.4k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 22 months ago by 4.1k • written 23 months ago by • 0
0
votes
3
replies
1.4k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 24 months ago by 6.7k • written 24 months ago by • 0
0
votes
4
replies
1.0k
views
Error installing Bioc
clusterProfiler Bioconductor BiocManager
updated 2.0 years ago by ★ 4.1k • written 2.0 years ago by • 0
0
votes
1
reply
3.8k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 2.1 years ago by 4.1k • written 2.1 years ago by • 0
4
votes
13
replies
4.4k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 22 months ago by ★ 5.2k • written 2.4 years ago by • 0
0
votes
1
reply
791
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
2
votes
1
reply
4.5k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 2.4 years ago by 700 • written 2.4 years ago by ▴ 10
1
vote
5
replies
1.8k
views
EBImage installation problem
BiocManager
updated 2.5 years ago by 6.7k • written 2.5 years ago by • 0
0
votes
3
replies
4.0k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
2.5 years ago Olivia • 0
1
vote
6
replies
2.0k
views
Problems installing BiocManager
BiocManager
2.6 years ago ksci ▴ 20
0
votes
2
replies
2.4k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.6 years ago by ★ 4.5k • written 2.6 years ago by • 0
0
votes
2
replies
1.6k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
2.8 years ago f1014063507 • 0
0
votes
8
replies
10k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 11 months ago by 700 • written 3.3 years ago by ▴ 10
12
votes
33
replies
34k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.6 years ago by 67k • written 3.5 years ago by ▴ 60
1
vote
2
replies
1.4k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 3.4 years ago by 67k • written 3.4 years ago by • 0
0
votes
1
reply
1.4k
views
Cannot install anything through BiocManager::install()
BiocManager
updated 3.5 years ago by ★ 4.0k • written 3.5 years ago by • 0
6
votes
6
replies
7.2k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 3.2 years ago by • 0 • written 3.5 years ago by 6.7k
0
votes
2
replies
1.0k
views
I cannot install the splatter on colab
splatter biocmanager
written 3.6 years ago by • 0
0
votes
1
reply
2.5k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.8 years ago by 67k • written 3.8 years ago by ▴ 10
1
vote
3
replies
1.3k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
3.8 years ago adklts • 0
1
vote
21
replies
5.7k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 4.5 years ago by ▴ 60
5
votes
6
replies
2.9k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 4.0 years ago by 25k • written 4.0 years ago by ▴ 90
1
vote
6
replies
3.5k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 4.3 years ago by 25k • written 4.3 years ago by ▴ 10
2
votes
3
replies
2.1k
views
Unable to install BiocManager
BiocManager
updated 4.3 years ago by 25k • written 4.3 years ago by ▴ 10
0
votes
1
reply
2.0k
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by • 0
1
vote
3
replies
4.7k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
1
vote
5
replies
3.3k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
3
votes
4
replies
1.8k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.6 years ago dakarai_esgdaille ▴ 10
0
votes
1
reply
1.9k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 4.7 years ago by 4.1k • written 4.7 years ago by • 0
0
votes
3
replies
1.1k
views
Installation path not writable
ebimage biocmanager
updated 4.7 years ago by 67k • written 4.7 years ago by • 0
0
votes
5
replies
2.0k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
5.0 years ago wang.lingjue • 0
1
vote
3
replies
1.8k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 5.0 years ago by 25k • written 5.0 years ago by ★ 2.4k
0
votes
1
reply
2.5k
views
BiocManager upgrade problem
BiocManager
updated 5.1 years ago by 25k • written 5.1 years ago by • 0
0
votes
7
replies
3.6k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
5.1 years ago james.dalgleish ▴ 30
0
votes
1
reply
987
views
BiocManager::install() update change from biocLite()
BiocManager
5.1 years ago howarth.mailing.lists ▴ 10
0
votes
13
replies
3.0k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 30
4
votes
9
replies
2.6k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 10
0
votes
4
replies
1.6k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 5.4 years ago by ★ 6.6k • written 5.4 years ago by • 0
0
votes
1
reply
2.8k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
5.4 years ago morlenrp • 0
6
votes
9
replies
2.7k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 90
9
votes
32
replies
7.2k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.5 years ago by 16k • written 5.5 years ago by • 0
0
votes
2
replies
3.2k
views
Problem installing scater
scater R biocmanager bioconductor
updated 5.9 years ago by ★ 28k • written 5.9 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k
Agree. > for library size and the average transcript length, what additional components will dds <- DESeq(dds) continue to normalize? Will…
Comment: DESeq Input from Salmon + tximport/tximeta by ATpoint ★ 4.5k
> If I use gene_counts_length_scaled.tsv as a metric that has already normalized for library size and the average transcript length No, o…
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k
`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample. For values much larger than the background, the e…
Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0
Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…
Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k
Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.
Votes
Comment: DESeq Input from Salmon + tximport/tximeta
Answer: DESeq Input from Salmon + tximport/tximeta
Answer: featureCounts segmentation fault with large chromosomes
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Awards • All
Popular Question to Assa Yeroslaviz ★ 1.5k
Popular Question to Gordon Smyth 51k
Popular Question to john • 0
Popular Question to James W. MacDonald 67k
Popular Question to abadgerw • 0
Locations • All
Ireland, 7 minutes ago
United States, 7 minutes ago
India, 11 minutes ago
France, 16 minutes ago
Baltimore MD, 16 minutes ago
Traffic: 858 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6