Showing : biocmanager • reset
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News: CRAN downtime
BiocManager Bioconductor
7 months ago shepherl 3.9k
5
votes
2
replies
980
views
can't install DESeq2 ("unable to access index for repository")
biocmanager DESeq2
10 months ago Alessia ▴ 40
3
votes
5
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1.3k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 11 months ago by 6.7k • written 11 months ago by ▴ 20
0
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4
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984
views
Unable to install BiocManager
Biocmanager R
updated 14 months ago by ▴ 50 • written 14 months ago by • 0
0
votes
2
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3.5k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 18 months ago by 66k • written 18 months ago by • 0
2
votes
4
replies
2.2k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 18 months ago by • 0
0
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2
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807
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 18 months ago by • 0
1
vote
3
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5.8k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 17 months ago by 3.9k • written 19 months ago by • 0
0
votes
3
replies
1.2k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 19 months ago by 6.7k • written 19 months ago by • 0
0
votes
4
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867
views
Error installing Bioc
clusterProfiler Bioconductor BiocManager
updated 19 months ago by ★ 4.0k • written 19 months ago by • 0
0
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1
reply
3.1k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 20 months ago by 3.9k • written 20 months ago by • 0
4
votes
13
replies
3.9k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 17 months ago by ★ 5.2k • written 24 months ago by • 0
0
votes
1
reply
685
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 23 months ago by ▴ 780 • written 23 months ago by • 0
2
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1
reply
4.1k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 2.0 years ago by 700 • written 2.0 years ago by ▴ 10
1
vote
5
replies
1.5k
views
EBImage installation problem
BiocManager
updated 2.1 years ago by 6.7k • written 2.1 years ago by • 0
0
votes
3
replies
3.7k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
2.1 years ago Olivia • 0
1
vote
6
replies
1.8k
views
Problems installing BiocManager
BiocManager
2.2 years ago ksci ▴ 20
0
votes
2
replies
2.2k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.2 years ago by ★ 4.2k • written 2.2 years ago by • 0
0
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2
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1.4k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
2.4 years ago f1014063507 • 0
0
votes
8
replies
8.9k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 6 months ago by 700 • written 2.9 years ago by ▴ 10
12
votes
33
replies
30k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.2 years ago by 66k • written 3.1 years ago by ▴ 60
1
vote
2
replies
1.2k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 3.0 years ago by 66k • written 3.0 years ago by • 0
0
votes
1
reply
1.3k
views
Cannot install anything through BiocManager::install()
BiocManager
updated 3.1 years ago by ★ 3.9k • written 3.1 years ago by • 0
6
votes
6
replies
6.9k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 2.8 years ago by • 0 • written 3.1 years ago by 6.7k
0
votes
2
replies
916
views
I cannot install the splatter on colab
splatter biocmanager
written 3.3 years ago by • 0
0
votes
1
reply
2.2k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.4 years ago by 66k • written 3.4 years ago by ▴ 10
1
vote
3
replies
1.2k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
3.4 years ago adklts • 0
1
vote
21
replies
5.2k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 4.1 years ago by ▴ 60
5
votes
6
replies
2.6k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 3.6 years ago by 25k • written 3.6 years ago by ▴ 90
1
vote
6
replies
3.1k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 10
2
votes
3
replies
1.9k
views
Unable to install BiocManager
BiocManager
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 10
0
votes
1
reply
1.8k
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
1
vote
3
replies
4.4k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 4.0 years ago by 25k • written 4.0 years ago by • 0
1
vote
5
replies
3.1k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
3
votes
4
replies
1.6k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.2 years ago dakarai_esgdaille ▴ 10
0
votes
1
reply
1.7k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 4.3 years ago by 3.9k • written 4.3 years ago by • 0
0
votes
3
replies
973
views
Installation path not writable
ebimage biocmanager
updated 4.4 years ago by 66k • written 4.4 years ago by • 0
0
votes
5
replies
1.7k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
4.6 years ago wang.lingjue • 0
1
vote
3
replies
1.4k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 4.6 years ago by 25k • written 4.6 years ago by ★ 2.4k
0
votes
1
reply
2.4k
views
BiocManager upgrade problem
BiocManager
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
0
votes
7
replies
3.3k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
4.7 years ago james.dalgleish ▴ 30
0
votes
1
reply
860
views
BiocManager::install() update change from biocLite()
BiocManager
4.7 years ago howarth.mailing.lists ▴ 10
0
votes
13
replies
2.7k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 20
4
votes
9
replies
2.4k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 10
0
votes
4
replies
1.4k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 5.0 years ago by ★ 6.5k • written 5.0 years ago by • 0
0
votes
1
reply
2.5k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
5.0 years ago morlenrp • 0
6
votes
9
replies
2.4k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.1 years ago by 25k • written 5.1 years ago by ▴ 90
9
votes
32
replies
6.3k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.1 years ago by 16k • written 5.1 years ago by • 0
0
votes
2
replies
2.9k
views
Problem installing scater
scater R biocmanager bioconductor
updated 5.5 years ago by ★ 28k • written 5.5 years ago by • 0
3
votes
4
replies
2.0k
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 5.5 years ago by 3.9k • written 5.5 years ago by • 0
50 results • Page 1 of 1
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Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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Popular Question to Stephanie M. Gogarten ▴ 870
Popular Question to Jonathan ▴ 10
Popular Question to Frederico Moraes Ferreira ▴ 100
Popular Question to richardallenfriedmanbrooklyn ▴ 20
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