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biocmanager
•
reset
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 5 months ago by
Hadi
• 0 • written 4.3 years ago by
charlotte
▴ 10
0
votes
2
replies
1.1k
views
Automatically install dependencies
Install
dependencies
biocmanager
updated 8 months ago by
shepherl
4.2k • written 8 months ago by
jessica.gillespie
• 0
1
vote
3
replies
4.3k
views
Unable to install any Bioconductor package with new R 4.4.1 - path nor writable - PLEASE HELP
pathnotwritable
BiocManager
LEA
updated 13 months ago by
James W. MacDonald
68k • written 13 months ago by
gabry.scata
▴ 10
0
votes
0
replies
696
views
News:
CRAN downtime
BiocManager
Bioconductor
24 months ago
shepherl
4.2k
5
votes
2
replies
1.8k
views
can't install DESeq2 ("unable to access index for repository")
biocmanager
DESeq2
2.2 years ago
Alessia
▴ 40
3
votes
5
replies
2.3k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 2.3 years ago by
Vincent J. Carey, Jr.
6.7k • written 2.3 years ago by
Ndimensional
▴ 20
0
votes
4
replies
1.7k
views
Unable to install BiocManager
Biocmanager
R
updated 2.6 years ago by
L
▴ 50 • written 2.6 years ago by
sidrah19220
• 0
0
votes
2
replies
6.6k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor
BioCManager
ChIPseeker
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
ASIF
• 0
2
votes
4
replies
3.6k
views
question regarding installation of "enrichplot" with BiocManager
R
BiocManager
install
clusterProfiler
GO
written 2.9 years ago by
abhisek001
• 0
0
votes
2
replies
1.4k
views
abs() error in rstudio
Bioconductor
BiocManager
abs()
Bioinformatics
written 2.9 years ago by
sue
• 0
1
vote
3
replies
7.4k
views
Not able to install packages in Bioconductor version '3.16'
Install
BiocManager
version3.16
updated 2.8 years ago by
shepherl
4.2k • written 3.0 years ago by
Tonmoya
• 0
0
votes
3
replies
1.9k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi
BiocManager
updated 3.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.0 years ago by
i.am.filippov
• 0
0
votes
4
replies
1.3k
views
Error installing Bioc
clusterProfiler
Bioconductor
BiocManager
updated 3.0 years ago by
Guido Hooiveld
★ 4.1k • written 3.0 years ago by
Javier
• 0
0
votes
1
reply
5.6k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler
BiocManager
updated 3.1 years ago by
shepherl
4.2k • written 3.1 years ago by
xqhuqd
• 0
4
votes
13
replies
5.6k
views
BiocParallel error with ChIPQC
BiocManager
ChIPQC
RSamtools
BiocParallel
updated 2.8 years ago by
Rory Stark
★ 5.2k • written 3.4 years ago by
etiennedanis
• 0
0
votes
1
reply
1.0k
views
Regarding Installation of GEOquery
BiocManager
installation
GEOquery
updated 3.3 years ago by
Basti
▴ 780 • written 3.3 years ago by
surinder.chd90
• 0
2
votes
1
reply
5.3k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 3.4 years ago by
Marcel Ramos
700 • written 3.4 years ago by
Yong
▴ 10
1
vote
5
replies
2.4k
views
EBImage installation problem
BiocManager
updated 3.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.5 years ago by
fabianalanadearaujo
• 0
0
votes
3
replies
4.7k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager
R
gofortran
Bioconductor
3.5 years ago
Olivia
• 0
1
vote
6
replies
2.6k
views
Problems installing BiocManager
BiocManager
3.6 years ago
ksci
▴ 20
0
votes
2
replies
2.9k
views
RNA-seq: problems with edgeR installation
BiocManager
edgeR
updated 3.6 years ago by
ATpoint
★ 5.0k • written 3.6 years ago by
alam
• 0
0
votes
2
replies
2.0k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
3.8 years ago
f1014063507
• 0
12
votes
33
replies
42k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 3.6 years ago by
James W. MacDonald
68k • written 4.5 years ago by
mizzle
▴ 60
1
vote
2
replies
1.7k
views
unable to install "org.Hs.eg.db"
Rterm.exe
BiocManager
org.Hs.eg.db
updated 4.4 years ago by
James W. MacDonald
68k • written 4.4 years ago by
chet.seligman
• 0
0
votes
1
reply
1.8k
views
Cannot install anything through BiocManager::install()
BiocManager
updated 4.5 years ago by
Kevin Blighe
★ 4.0k • written 4.5 years ago by
Sasha
• 0
6
votes
6
replies
7.9k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 4.2 years ago by
Mengfei
• 0 • written 4.5 years ago by
Vincent J. Carey, Jr.
6.7k
0
votes
2
replies
1.3k
views
I cannot install the splatter on colab
splatter
biocmanager
written 4.7 years ago by
Tianyu
• 0
0
votes
1
reply
2.9k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager
Install
updated 4.8 years ago by
James W. MacDonald
68k • written 4.8 years ago by
saadmurtazakhan
▴ 10
1
vote
3
replies
1.6k
views
Error by installing BiocManager
BiocInstaller
BiocManager
Bioconductor
4.8 years ago
adklts
• 0
1
vote
21
replies
6.8k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 5.5 years ago by
Lucy
▴ 60
5
votes
6
replies
3.6k
views
Download errors during Bioconductor 3.12 update
reactome.db
Bioconductor
BiocManager
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
Michael Steinbaugh
▴ 90
1
vote
6
replies
4.5k
views
installing bioconductor packages with DNS problem
bioconductor
biocmanager
installing packages
dns
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
PabloR
▴ 10
2
votes
3
replies
2.6k
views
Unable to install BiocManager
BiocManager
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
anamarija
▴ 10
0
votes
1
reply
2.5k
views
ensembldb package installation issue
ensembldb
package
installation
BiocManager
updated 5.3 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
dylangagler
• 0
1
vote
3
replies
5.3k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor
installation
proxy
BiocManager
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
chen
• 0
1
vote
5
replies
4.0k
views
Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
bs14ab
• 0
3
votes
4
replies
2.2k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
5.6 years ago
dakarai_esgdaille
▴ 10
0
votes
1
reply
2.4k
views
I have installed "muscle", but package will not work
muscle
BiocManager
updated 5.7 years ago by
shepherl
4.2k • written 5.7 years ago by
coberkfell20
• 0
0
votes
3
replies
1.5k
views
Installation path not writable
ebimage
biocmanager
updated 5.8 years ago by
James W. MacDonald
68k • written 5.8 years ago by
jenigabi230399
• 0
0
votes
5
replies
2.6k
views
Not latest package version through 'BiocManager::install()'
debug
BiocManager
R pacakge
R
mass spectrometry
6.0 years ago
wang.lingjue
• 0
1
vote
3
replies
2.9k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade
BiocManager
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
2.8k
views
BiocManager upgrade problem
BiocManager
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
ali.siavosh
• 0
0
votes
7
replies
4.2k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors
GenomicRanges
BiocManager
6.1 years ago
james.dalgleish
▴ 30
0
votes
1
reply
1.2k
views
BiocManager::install() update change from biocLite()
BiocManager
6.1 years ago
howarth.mailing.lists
▴ 10
0
votes
13
replies
3.7k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager
Mac
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
raf4
▴ 30
4
votes
9
replies
3.1k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
lejeczek
▴ 10
0
votes
4
replies
1.9k
views
Error message: "Request to BioMart web service failed."
BiocManager
biomaRt
listMarts()
ensembl
Biomart
updated 6.4 years ago by
Mike Smith
★ 6.6k • written 6.4 years ago by
ktd2918
• 0
0
votes
1
reply
3.1k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect
msa
bios2mds
BiocManager
Bioconductor
6.4 years ago
morlenrp
• 0
6
votes
9
replies
3.3k
views
Install Bioconductor 3.7
docker
BiocManager
BiocVersion
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
Michael Steinbaugh
▴ 90
9
votes
32
replies
9.2k
views
Rsamtools v 1.99.6 installation error
Rsamtools
BiocManager
R 3.6
ubuntu
updated 6.5 years ago by
Hervé Pagès
16k • written 6.5 years ago by
kubovcij
• 0
58 results • Page
1 of 2
Recent ...
Replies
Comment: Ensembl 115 has been released!
by
eja.gsssssswwse.r.m
• 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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