Showing : cancer • reset
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heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
written 10.4 years ago by ▴ 10
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1
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523
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BioC packages in cancer genomics
genomics cancer
updated 13 months ago by ★ 3.9k • written 13 months ago by ▴ 670
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0
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557
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Job: Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions cancer networks machine_learning
13 months ago Colm • 0
0
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0
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686
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
17 months ago DKFZ International PhD Program ▴ 10
1
vote
0
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731
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
21 months ago Andy Lynch ▴ 120
0
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0
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722
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Calculating tumour purity having only CNA data
PureCN CNA purity cancer
21 months ago JAcky • 0
0
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0
replies
721
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
22 months ago Sarah • 0
0
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1
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1.2k
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An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 20.2 years ago by ▴ 810
1
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0
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720
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
24 months ago DKFZ International PhD Program ▴ 10
0
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1
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698
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WGCNA
Cancer
updated 2.4 years ago by ▴ 760 • written 2.4 years ago by • 0
0
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0
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822
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
3.0 years ago • updated 2.6 years ago Gordon Smyth 50k
0
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0
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833
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
3.1 years ago Daniel Brewer ▴ 100
0
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0
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890
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
3.3 years ago Daniel Brewer ▴ 100
0
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0
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929
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Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
3.5 years ago Daniel Brewer ▴ 100
2
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13
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1.3k
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Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 3.5 years ago by 41k • written 3.5 years ago by • 0
4
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7
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1.5k
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Limma sample groups
microarray limma affy cancer
updated 3.6 years ago by 50k • written 3.6 years ago by • 0
0
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5
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2.0k
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TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by ▴ 10
1
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6
replies
2.1k
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 14 months ago by • 0 • written 3.6 years ago by • 0
0
votes
5
replies
1.9k
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Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 3.6 years ago by 41k • written 3.6 years ago by • 0
0
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0
replies
800
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
4.2 years ago • updated 3.8 years ago Daniel Brewer ▴ 100
4
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10
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2.5k
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how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 10
1
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2
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3.7k
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Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
0
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3
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1.3k
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Topgo, Deseq and KEGG pathway
annotation cancer
updated 4.0 years ago by 3.8k • written 4.0 years ago by • 0
0
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1
reply
979
views
WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 4.1 years ago by ★ 3.0k • written 4.1 years ago by • 0
0
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0
replies
966
views
Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.2 years ago • updated 4.1 years ago Shamith.Samarajiwa ▴ 180
0
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0
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852
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
4.1 years ago Patrick Kimes ▴ 10
0
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0
replies
929
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Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
4.4 years ago • updated 4.3 years ago marschaefer • 0
0
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0
replies
662
views
Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
4.3 years ago luciomora8 • 0
0
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0
replies
824
views
Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
4.4 years ago Daniel Brewer ▴ 100
2
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3
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1.2k
views
DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 3 months ago by • 0 • written 4.4 years ago by • 0
0
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0
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554
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miRNA and drugs
cancer
4.4 years ago maria.k.pagoni • 0
1
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0
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1.0k
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
4.5 years ago Shamith.Samarajiwa ▴ 180
1
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0
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972
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
4.6 years ago • updated 4.5 years ago Shamith.Samarajiwa ▴ 180
0
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0
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852
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Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
4.5 years ago Johannes Rainer ★ 2.0k
1
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4
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1.2k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 4.5 years ago by ▴ 120 • written 4.5 years ago by • 0
2
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1
reply
2.3k
views
How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 4.5 years ago by ▴ 830 • written 4.5 years ago by ▴ 20
0
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0
replies
751
views
Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
4.5 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
897
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.6 years ago sheneicechang • 0
0
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0
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676
views
News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
4.6 years ago Ning Leng • 0
0
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5
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1.8k
views
RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
4.8 years ago mah19 • 0
0
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0
replies
798
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MatchGenes in Bumphunter - result list with multiple genes
cancer
4.8 years ago hanna_engqvist • 0
1
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0
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1.5k
views
Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
5.0 years ago • updated 4.9 years ago Shamith.Samarajiwa ▴ 180
0
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0
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832
views
Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
4.9 years ago jmaanaki • 0
0
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2
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875
views
Chromosomal location mapping for miRNAs
cancer
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
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3
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952
views
Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 4.9 years ago by 41k • written 4.9 years ago by • 0
1
vote
4
replies
956
views
DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 4.9 years ago by 41k • written 4.9 years ago by • 0
4
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1
reply
8.5k
views
WGCNA-unable to install GO.db package
go cancer
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 20
0
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1
reply
732
views
Help installing netReg
netReg cancer
5.0 years ago sbrackett007 • 0
2
votes
4
replies
1.2k
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
5.0 years ago s.goncalvesclaro ▴ 10
0
votes
0
replies
838
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.0 years ago Shamith.Samarajiwa ▴ 180
50 results • Page 1 of 1
Recent ...
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Comment: DESeq2 setting significant p-value by Michael Love 41k
It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.
Comment: Input Question for deseq.r by ATpoint ★ 4.0k
It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…
Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k
In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …
Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k
```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…
Comment: DESeq2 setting significant p-value by Dev • 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Votes
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
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