Showing : s4vectors • reset
11
votes
17
replies
2.2k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors DataFrame haven_labelled haven
updated 16 months ago by ▴ 20 • written 17 months ago by ▴ 30
10
votes
10
replies
2.4k
views
Does package S4Vectors break ifelse?
S4Vectors ifelse
updated 6.8 years ago by ▴ 40 • written 8.7 years ago by ★ 3.0k
5
votes
6
replies
635
views
DataFrame Construction With Non-standard Column
S4Vectors
updated 7 months ago by 16k • written 7 months ago by ★ 1.5k
5
votes
5
replies
1.4k
views
How to extract out wanted IntegerList more elegantly from nested list?
r s4vectors integerlist iranges
updated 7.6 years ago by ★ 11k • written 7.6 years ago by • 0
5
votes
3
replies
3.7k
views
Add new columns to DESeqResults from text file by matching rownames.
deseq2 deseq merge data frames cbind s4vectors
updated 6.6 years ago by 41k • written 6.6 years ago by ▴ 10
5
votes
2
replies
909
views
DataFrame after splitting and back
DataFrame S4Vectors
updated 5.0 years ago by ★ 11k • written 5.0 years ago by 1.6k
5
votes
10
replies
2.2k
views
caught segfault error when loading S4Vectors package in R
R S4Vectors segfault
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 20
4
votes
6
replies
1.5k
views
breakTies for a Hits-object based on value in mcols?
s4vectors hits
updated 6.4 years ago by ★ 11k • written 6.4 years ago by ▴ 170
4
votes
1
reply
1.0k
views
Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 2.3 years ago by 16k • written 2.4 years ago by ▴ 180
4
votes
10
replies
2.2k
views
Printing DataFrame with nested DataFrames causes error
s4vectors dataframe
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 70
4
votes
4
replies
1.1k
views
S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconductor 3.17
S4Vectors
written 11 months ago by ▴ 90
3
votes
12
replies
2.0k
views
S4Vectors and subectHits error
s4vectors copywriter
updated 6.0 years ago by ★ 11k • written 6.0 years ago by ▴ 200
3
votes
12
replies
2.5k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.1 years ago sergi.picart ▴ 20
3
votes
1
reply
1.1k
views
shiftApply verbosity (in ChIPQC)
ChIPQC s4vectors
updated 8.0 years ago by ▴ 420 • written 8.2 years ago by ▴ 140
3
votes
5
replies
1.7k
views
How can I coerce "list" to S4 "List" (reproducible example is available)?
coercion data manipulation s4vectors List
7.8 years ago Jurat Shahidin ▴ 80
3
votes
8
replies
2.5k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors Matrix
7.2 years ago peter.kharchenko ▴ 30
3
votes
2
replies
1.6k
views
Proper way to read in a DataFrame with CharacterList columns that was saved to a text file
s4vectors genomicranges
updated 7.9 years ago by ★ 11k • written 7.9 years ago by ★ 1.0k
3
votes
2
replies
2.5k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 2.9 years ago by 65k • written 2.9 years ago by ★ 1.5k
2
votes
3
replies
1.5k
views
Is there an easy way to extend coverage to seqlengths and fill with zeroes?
coverage s4vectors seqlengths
8.2 years ago liz.ingsimmons ▴ 140
2
votes
1
reply
867
views
DataFrame or DFrame
S4Vectors
updated 2.9 years ago by 690 • written 2.9 years ago by ★ 1.5k
2
votes
3
replies
1.5k
views
"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges rtracklayer VariantAnnotation S4Vectors SummarizedExperiment
updated 4.8 years ago by ★ 13k • written 4.8 years ago by ▴ 30
2
votes
1
reply
262
views
DataFrame Printing User Control
S4Vectors
updated 5 months ago by 16k • written 5 months ago by ★ 1.5k
2
votes
2
replies
2.0k
views
Error in installation of scran
S4Vectors IRanges XVector GenomicRanges scran
updated 5.3 years ago by ★ 28k • written 5.3 years ago by • 0
2
votes
9
replies
1.7k
views
S4Vectors not loading
S4Vectors
4.2 years ago Panos Balomenos • 0
2
votes
1
reply
884
views
Adding a column to a class that contains DataFrame
s4vectors
6.3 years ago Michael Love 41k
2
votes
0
replies
706
views
News: BioC2021 organizing committee
BioC2021 S4Vectors
3.5 years ago Levi Waldron ★ 1.1k
2
votes
1
reply
933
views
Question about parallel manipulation on CharacterList objects
s4vectors IRanges
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 450
2
votes
3
replies
921
views
S4Vectors, strange metadata behavior
GRangesList S4Vectors
updated 2.4 years ago by 16k • written 2.4 years ago by ▴ 80
2
votes
2
replies
2.1k
views
Problem when installing DESeq on MAC OS X
s4vectors mac os x deseq
updated 8.2 years ago by ★ 13k • written 8.2 years ago by • 0
1
vote
2
replies
1.7k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation s4vectors
updated 6.5 years ago by 25k • written 6.6 years ago by • 0
1
vote
11
replies
1.7k
views
Error uploading deseq2
deseq2 S4Vectors
updated 4.0 years ago by 25k • written 4.0 years ago by • 0
1
vote
2
replies
1.4k
views
Error running table() on an RleList returned by coverage()
GenomicRanges S4Vectors
updated 9.6 years ago by 16k • written 9.6 years ago by ★ 5.2k
1
vote
4
replies
1.7k
views
IRanges missing S4Vectors_defines.h
iranges s4vectors
updated 9.0 years ago by 16k • written 9.0 years ago by ▴ 10
1
vote
2
replies
3.3k
views
Error in installation S4Vectors package
s4vectors
updated 8.4 years ago by ★ 8.2k • written 8.4 years ago by • 0
1
vote
1
reply
5.1k
views
Error trying to install GenomicRanges
cummerbund rtracklayer genomicranges s4vectors iranges
updated 8.3 years ago by ★ 6.5k • written 8.3 years ago by • 0
1
vote
1
reply
950
views
Bug report: unpredictable coloumn ranaming in DataFrame class
S4Vectors
updated 7.0 years ago by ★ 11k • written 7.0 years ago by • 0
1
vote
0
replies
1.3k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene
6.6 years ago Leonardo Collado Torres ★ 1.0k
1
vote
4
replies
2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
1
vote
3
replies
1.6k
views
Correct way to split and unsplit a DataFrame
s4vectors iranges
updated 4.7 years ago by ★ 11k • written 4.7 years ago by ▴ 90
1
vote
1
reply
796
views
Checking if to DataFrames are identical
S4Vectors DataFrame
4.6 years ago maltethodberg ▴ 170
1
vote
7
replies
2.3k
views
What to do when all the installation methods for a package fail (pagoo)?
S4Vectors pagoo
22 months ago MauriAndres • 0
0
votes
1
reply
1.7k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads error as.vector(data) s4vectors s4
8.6 years ago schasse • 0
0
votes
1
reply
1.9k
views
How to install S4Vector package in R v 3.1.1?
s4vectors R 3.1.1
updated 8.9 years ago by 16k • written 8.9 years ago by ▴ 30
0
votes
1
reply
761
views
Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors methods
4.6 years ago Aditya ▴ 160
0
votes
7
replies
3.2k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
4.6 years ago james.dalgleish ▴ 30
0
votes
1
reply
1.5k
views
Is S4Vectors not able to install in R-3.5.1?
S4Vectors R-3.5.1
5.4 years ago zhang303 • 0
0
votes
1
reply
3.2k
views
problem in loading Deseq2
deseq2 S4Vectors
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
0
votes
4
replies
1.6k
views
‘parallel_slot_names’ is not exported by 'namespace:S4Vectors'
S4Vectors
updated 3.4 years ago by 16k • written 3.4 years ago by • 0
0
votes
2
replies
542
views
Using dplyr commands with DataFrame objects
S4Vectors
6 months ago GE • 0
0
votes
6
replies
1.5k
views
Error: duplicate row.names
GenomicRanges methylKit S4Vectors
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
50 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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