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1
vote
3
replies
2.0k
views
BioNet package network analysis important questions for tutorial
BioNet
bioconductor
affymetrixchip
network analysis
10.8 years ago
svlachavas
▴ 840
5
votes
9
replies
4.3k
views
Merge different datasets regarding a common number of DE genes in R
bioconductor
expresiondataset
affymetrixchip
differential gene expression
10.8 years ago
svlachavas
▴ 840
1
vote
2
replies
2.0k
views
Question about the proper way to combine Illumina Human HT-12 v4 expression datasets from different labs
combat
batch effect
10.8 years ago
jaro.slamecka
▴ 140
1
vote
1
reply
1.6k
views
DeSeq2 Multiple Conditons
deseq2
multiple factor design
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
umut.caglar
▴ 10
2
votes
4
replies
9.6k
views
DESEQ2 results and contrast (and a relevel question)
deseq
deseq2
10.8 years ago
yg
• 0
0
votes
3
replies
2.8k
views
problem with cbind on GRanges object - new bug?
genomicranges
cbind
10.8 years ago
Janet Young
▴ 740
3
votes
2
replies
2.3k
views
How are autofluorescence values used in the spillover/compensate functions?
flowcore
flow cytometry
compensation
spillover
updated 10.8 years ago by
Greg Finak
▴ 150 • written 10.8 years ago by
peterfoster
▴ 20
0
votes
1
reply
1.0k
views
several gene names for a probeID in affymetrix annotation file
affy
annotation
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
nazaninhoseinkhan
• 0
0
votes
1
reply
2.3k
views
DEXSeq with multiple conditions
dexseq
alternative splicing
exon skipping
updated 10.8 years ago by
Simon Anders
★ 3.8k • written 10.8 years ago by
ebadr
• 0
0
votes
5
replies
3.0k
views
loadGSC() Piano package
piano
updated 10.8 years ago by
Leif Väremo
▴ 70 • written 10.8 years ago by
nonCodingGene
▴ 10
0
votes
1
reply
1.7k
views
Deseq2 and gene clustering
deseq2
clustering
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
aristotele_m
▴ 40
0
votes
6
replies
9.7k
views
Deseq2 supervised heatmap
deseq2
supervised
10.8 years ago
aristotele_m
▴ 40
3
votes
5
replies
2.6k
views
PCA of voom weight values
limma
voom
rnaseq
updated 10.8 years ago by
Gordon Smyth
53k • written 10.8 years ago by
Lorena Pantano
▴ 140
0
votes
5
replies
2.3k
views
News:
Ensembl 79 release is out!
Ensembl
biomart
release
news
News
updated 10.8 years ago by
Dan Tenenbaum
★ 8.2k • written 10.8 years ago by
amonida
▴ 20
0
votes
0
replies
1.6k
views
News:
OmicCircos was updated
visualization
omiccircos
News
10.8 years ago
Hu, Ying NIH/NCI [E]
▴ 50
0
votes
2
replies
1.8k
views
RCircos 2D track plot for a small region of genome
BSgenome
BSgenome
BSgenome
BSgenome
updated 10.8 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 12.0 years ago by
Guest User
★ 13k
1
vote
3
replies
1.9k
views
OmicCircos mapping data file.
omiccircos
updated 10.8 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.2 years ago by
abdul rawoof
▴ 60
0
votes
1
reply
2.0k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 10.8 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.2 years ago by
micahgearhart
• 0
0
votes
1
reply
1.5k
views
Connecting with Stack Exchange account?
meta
10.8 years ago
Charles Determan Jr
▴ 140
2
votes
2
replies
8.5k
views
biocLite() fails to update packages when main library not writable
bioclite
package updates
updated 10.8 years ago by
Dan Tenenbaum
★ 8.2k • written 10.8 years ago by
Jenny Drnevich
★ 2.0k
2
votes
7
replies
1.8k
views
Is there a way to find corresponding svn revision for the current /devel/src/contrib/PACKAGES and /release?
svn
PACKAGES
updated 10.8 years ago by
Dan Tenenbaum
★ 8.2k • written 10.8 years ago by
levk
• 0
0
votes
2
replies
2.0k
views
Possible Data integration of molecular data(transcriptomic) and imaging data from the same patients in R
data integration
microarray
bioconductor
affymetrix
biomarkers
updated 10.8 years ago by
Wolfgang Huber
★ 13k • written 10.8 years ago by
svlachavas
▴ 840
4
votes
4
replies
2.6k
views
treatDGE vs glmLRT
edger
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
jet2020
▴ 10
0
votes
1
reply
2.0k
views
Error message suggestion for fullCoverage in derfinder
derfinder
updated 10.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 10.9 years ago by
jessica.hekman
▴ 40
1
vote
10
replies
3.2k
views
derfinder failing in mergeResults()
derfinder
updated 10.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 11.0 years ago by
jessica.hekman
▴ 40
0
votes
1
reply
3.1k
views
Problem in the beginning
affy
10.8 years ago
zillurbmb51
• 0
0
votes
0
replies
1.7k
views
Re: FlowStats help
flowclust
opencyto
flowcytometry
10.8 years ago
Jiang, Mike
★ 1.3k
0
votes
0
replies
1.3k
views
riboSeqR: questions on plotTranscript function
riboseqr
10.8 years ago
antonvila.s
• 0
3
votes
4
replies
1.9k
views
problem with getting a subset of alignments mapping to a GRange using readGAlignmentsFromBam
genomicalignments
scanbamparam
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
rasi1983
▴ 10
1
vote
1
reply
3.3k
views
Factorial Design with DESeq2; contrast problem.
deseq2
multiple factor design
complex-design
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
sifujio
• 0
0
votes
4
replies
3.3k
views
Error using Bsmooth.tstat due to NAs
Coverage
bsseq
updated 2.2 years ago by
Adam
• 0 • written 11.3 years ago by
Guest User
★ 13k
1
vote
3
replies
3.3k
views
edgeR for DEG between two groups
edgeR
10.8 years ago
zhouxiuqing
• 0
1
vote
1
reply
1.7k
views
Performing findOverlaps when both subject and query are on the order of a million
findoverlaps
updated 10.8 years ago by
Hervé Pagès
16k • written 10.8 years ago by
mrk.carty
▴ 30
0
votes
2
replies
922
views
Copy of Course Certificate
Course Certificate
written 10.8 years ago by
mbpinho
• 0
2
votes
3
replies
2.1k
views
Need advice on normalization of SMART-amplified RNA-Seq data
normalization
rna-seq
deseq2
edger
smart
updated 10.8 years ago by
Ryan C. Thompson
★ 7.9k • written 10.8 years ago by
Jon Bråte
▴ 270
3
votes
3
replies
8.1k
views
Find DEG from RNA-seq: What if have only RPKM data?
deg
rna-seq
rpkm
updated 10.8 years ago by
b.nota
▴ 370 • written 10.8 years ago by
Yue Zhao
• 0
1
vote
7
replies
7.1k
views
DESeq2 with unbalanced experimental design
deseq2
updated 14 months ago by
Satoshi
• 0 • written 10.8 years ago by
celine
• 0
7
votes
10
replies
6.5k
views
Time course RNA-Seq using edgeR
edger
updated 10.8 years ago by
Gordon Smyth
53k • written 10.8 years ago by
dsperley
• 0
0
votes
1
reply
2.0k
views
Error attaching GO.db package
GO.db
loadnamespace
annotation
chippeakanno
updated 10.8 years ago by
Dan Tenenbaum
★ 8.2k • written 10.8 years ago by
adrianna-christina
▴ 10
2
votes
1
reply
2.7k
views
Change the start of GenomicRanges list
genomicranges
updated 10.8 years ago by
Hervé Pagès
16k • written 10.8 years ago by
Jake
▴ 90
2
votes
2
replies
1.5k
views
timeLinePlot() ylab parameter doesn't work?
flowviz
flowcore
updated 10.8 years ago by
Jiang, Mike
★ 1.3k • written 10.8 years ago by
pavitrarc
▴ 20
0
votes
0
replies
1.7k
views
News:
system maintenance / downtime Wed March 11
news
News
10.8 years ago
Dan Tenenbaum
★ 8.2k
3
votes
3
replies
1.5k
views
Accessing old download statistics
bioconductor
download
updated 10.8 years ago by
Hervé Pagès
16k • written 10.8 years ago by
kristoffer.vittingseerup
▴ 20
6
votes
5
replies
4.6k
views
DESeq2: which normalized data matrix should I take?
deseq2
10.8 years ago
Xiaokuan Wei
▴ 230
0
votes
2
replies
1.5k
views
difficulty in mapping gene names to probes coordinates in a celfile
microarray
probe
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
nazaninhoseinkhan
• 0
0
votes
1
reply
1.2k
views
Gviz: DataTrack generating non-user data points?
gviz
r
updated 10.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.9 years ago by
melissalee0
• 0
0
votes
1
reply
1.8k
views
NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm
copynumber
10.8 years ago
kforner
• 0
2
votes
1
reply
1.8k
views
rhdf5 segmentation error with vdata
rhdf5
updated 10.8 years ago by
Bernd Fischer
▴ 550 • written 10.8 years ago by
sa.cizmeli
• 0
4
votes
2
replies
1.3k
views
Creating all possible k combinations of n objects with a constraint for large n
base
10.8 years ago
mrk.carty
▴ 30
3
votes
5
replies
2.4k
views
help! new to R! Detection p value cut off
p values
microarray
FDR
10.8 years ago
a
• 0
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
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