1
vote
3
replies
2.0k
views
BioNet package network analysis important questions for tutorial
BioNet bioconductor affymetrixchip network analysis
10.8 years ago svlachavas ▴ 840
5
votes
9
replies
4.3k
views
Merge different datasets regarding a common number of DE genes in R
bioconductor expresiondataset affymetrixchip differential gene expression
10.8 years ago svlachavas ▴ 840
1
vote
2
replies
2.0k
views
Question about the proper way to combine Illumina Human HT-12 v4 expression datasets from different labs
combat batch effect
10.8 years ago jaro.slamecka ▴ 140
1
vote
1
reply
1.6k
views
DeSeq2 Multiple Conditons
deseq2 multiple factor design
updated 10.8 years ago by 43k • written 10.8 years ago by ▴ 10
2
votes
4
replies
9.6k
views
DESEQ2 results and contrast (and a relevel question)
deseq deseq2
10.8 years ago yg • 0
0
votes
3
replies
2.8k
views
problem with cbind on GRanges object - new bug?
genomicranges cbind
10.8 years ago Janet Young ▴ 740
3
votes
2
replies
2.3k
views
How are autofluorescence values used in the spillover/compensate functions?
flowcore flow cytometry compensation spillover
updated 10.8 years ago by ▴ 150 • written 10.8 years ago by ▴ 20
0
votes
1
reply
1.0k
views
several gene names for a probeID in affymetrix annotation file
affy annotation
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
0
votes
1
reply
2.3k
views
DEXSeq with multiple conditions
dexseq alternative splicing exon skipping
updated 10.8 years ago by ★ 3.8k • written 10.8 years ago by • 0
0
votes
5
replies
3.0k
views
loadGSC() Piano package
piano
updated 10.8 years ago by ▴ 70 • written 10.8 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Deseq2 and gene clustering
deseq2 clustering
updated 10.8 years ago by 43k • written 10.8 years ago by ▴ 40
0
votes
6
replies
9.7k
views
Deseq2 supervised heatmap
deseq2 supervised
10.8 years ago aristotele_m ▴ 40
3
votes
5
replies
2.6k
views
PCA of voom weight values
limma voom rnaseq
updated 10.8 years ago by 53k • written 10.8 years ago by ▴ 140
0
votes
5
replies
2.3k
views
News: Ensembl 79 release is out!
Ensembl biomart release news News
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ▴ 20
0
votes
0
replies
1.6k
views
News: OmicCircos was updated
visualization omiccircos News
10.8 years ago Hu, Ying NIH/NCI [E] ▴ 50
0
votes
2
replies
1.8k
views
RCircos 2D track plot for a small region of genome
BSgenome BSgenome BSgenome BSgenome
updated 10.8 years ago by ▴ 50 • written 12.0 years ago by ★ 13k
1
vote
3
replies
1.9k
views
OmicCircos mapping data file.
omiccircos
updated 10.8 years ago by ▴ 50 • written 11.2 years ago by ▴ 60
0
votes
1
reply
2.0k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 10.8 years ago by ▴ 50 • written 11.2 years ago by • 0
0
votes
1
reply
1.5k
views
Connecting with Stack Exchange account?
meta
10.8 years ago Charles Determan Jr ▴ 140
2
votes
2
replies
8.5k
views
biocLite() fails to update packages when main library not writable
bioclite package updates
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ★ 2.0k
2
votes
7
replies
1.8k
views
Is there a way to find corresponding svn revision for the current /devel/src/contrib/PACKAGES and /release?
svn PACKAGES
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by • 0
0
votes
2
replies
2.0k
views
Possible Data integration of molecular data(transcriptomic) and imaging data from the same patients in R
data integration microarray bioconductor affymetrix biomarkers
updated 10.8 years ago by ★ 13k • written 10.8 years ago by ▴ 840
4
votes
4
replies
2.6k
views
treatDGE vs glmLRT
edger
updated 10.8 years ago by 68k • written 10.8 years ago by ▴ 10
0
votes
1
reply
2.0k
views
Error message suggestion for fullCoverage in derfinder
derfinder
updated 10.8 years ago by ★ 1.1k • written 10.9 years ago by ▴ 40
1
vote
10
replies
3.2k
views
derfinder failing in mergeResults()
derfinder
updated 10.8 years ago by ★ 1.1k • written 11.0 years ago by ▴ 40
0
votes
1
reply
3.1k
views
Problem in the beginning
affy
10.8 years ago zillurbmb51 • 0
0
votes
0
replies
1.7k
views
Re: FlowStats help
flowclust opencyto flowcytometry
10.8 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.3k
views
riboSeqR: questions on plotTranscript function
riboseqr
10.8 years ago antonvila.s • 0
3
votes
4
replies
1.9k
views
problem with getting a subset of alignments mapping to a GRange using readGAlignmentsFromBam
genomicalignments scanbamparam
updated 10.8 years ago by 68k • written 10.8 years ago by ▴ 10
1
vote
1
reply
3.3k
views
Factorial Design with DESeq2; contrast problem.
deseq2 multiple factor design complex-design
updated 10.8 years ago by 43k • written 10.8 years ago by • 0
0
votes
4
replies
3.3k
views
Error using Bsmooth.tstat due to NAs
Coverage bsseq
updated 2.2 years ago by • 0 • written 11.3 years ago by ★ 13k
1
vote
3
replies
3.3k
views
edgeR for DEG between two groups
edgeR
10.8 years ago zhouxiuqing • 0
1
vote
1
reply
1.7k
views
Performing findOverlaps when both subject and query are on the order of a million
findoverlaps
updated 10.8 years ago by 16k • written 10.8 years ago by ▴ 30
0
votes
2
replies
922
views
Copy of Course Certificate
Course Certificate
written 10.8 years ago by • 0
2
votes
3
replies
2.1k
views
Need advice on normalization of SMART-amplified RNA-Seq data
normalization rna-seq deseq2 edger smart
updated 10.8 years ago by ★ 7.9k • written 10.8 years ago by ▴ 270
3
votes
3
replies
8.1k
views
Find DEG from RNA-seq: What if have only RPKM data?
deg rna-seq rpkm
updated 10.8 years ago by ▴ 370 • written 10.8 years ago by • 0
1
vote
7
replies
7.1k
views
DESeq2 with unbalanced experimental design
deseq2
updated 14 months ago by • 0 • written 10.8 years ago by • 0
7
votes
10
replies
6.5k
views
Time course RNA-Seq using edgeR
edger
updated 10.8 years ago by 53k • written 10.8 years ago by • 0
0
votes
1
reply
2.0k
views
Error attaching GO.db package
GO.db loadnamespace annotation chippeakanno
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ▴ 10
2
votes
1
reply
2.7k
views
Change the start of GenomicRanges list
genomicranges
updated 10.8 years ago by 16k • written 10.8 years ago by ▴ 90
2
votes
2
replies
1.5k
views
timeLinePlot() ylab parameter doesn't work?
flowviz flowcore
updated 10.8 years ago by ★ 1.3k • written 10.8 years ago by ▴ 20
0
votes
0
replies
1.7k
views
News: system maintenance / downtime Wed March 11
news News
10.8 years ago Dan Tenenbaum ★ 8.2k
3
votes
3
replies
1.5k
views
Accessing old download statistics
bioconductor download
updated 10.8 years ago by 16k • written 10.8 years ago by ▴ 20
6
votes
5
replies
4.6k
views
DESeq2: which normalized data matrix should I take?
deseq2
10.8 years ago Xiaokuan Wei ▴ 230
0
votes
2
replies
1.5k
views
difficulty in mapping gene names to probes coordinates in a celfile
microarray probe
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
0
votes
1
reply
1.2k
views
Gviz: DataTrack generating non-user data points?
gviz r
updated 10.8 years ago by ★ 1.6k • written 10.9 years ago by • 0
0
votes
1
reply
1.8k
views
NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm copynumber
10.8 years ago kforner • 0
2
votes
1
reply
1.8k
views
rhdf5 segmentation error with vdata
rhdf5
updated 10.8 years ago by ▴ 550 • written 10.8 years ago by • 0
4
votes
2
replies
1.3k
views
Creating all possible k combinations of n objects with a constraint for large n
base
10.8 years ago mrk.carty ▴ 30
3
votes
5
replies
2.4k
views
help! new to R! Detection p value cut off
p values microarray FDR
10.8 years ago a • 0
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
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