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13
votes
35
replies
16k
views
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice
david
updated 5.8 years ago by
gevermalc
• 0 • written 8.8 years ago by
Vivek.b
▴ 100
0
votes
17
replies
2.5k
views
Defining Weights in marrayNorm.
Microarray
Microarray
updated 20.7 years ago by
Yuk Fai Leung
▴ 100 • written 20.8 years ago by
Josef Walker
▴ 20
3
votes
18
replies
2.9k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 15 days ago
shepherl
3.9k
0
votes
20
replies
5.1k
views
ttest or fold change
updated 20.4 years ago by
Garrett Frampton
▴ 20 • written 20.4 years ago by
Jason Hipp
▴ 40
2
votes
27
replies
4.0k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.6 years ago • updated 8.5 years ago
alexgraehl
▴ 20
0
votes
18
replies
3.7k
views
Genbank to Unigene IDs
annotate
AnnBuilder
annotate
AnnBuilder
updated 20.0 years ago by
Kane, David
▴ 10 • written 20.1 years ago by
Gordon Smyth
50k
0
votes
22
replies
3.0k
views
'x' has "out of limits" views ,Issue with the file size!! Compareequence function is not working
compilation error
filesize
bioconductor
6.7 years ago
susobhanbaidya
• 0
0
votes
13
replies
2.4k
views
two color arrays normalization
limma
limma
updated 15.2 years ago by
Jenny Drnevich
★ 2.0k • written 15.2 years ago by
Giusy Della Gatta
▴ 110
1
vote
16
replies
3.6k
views
Error: could not find function "dba"
software error
diffbind
dba
7.5 years ago
mmarins
• 0
1
vote
24
replies
4.8k
views
GenomicAlignments - extracting sequence signatures from bam file
bam file
HIV
cytosine
6.6 years ago
achaillon
• 0
8
votes
17
replies
14k
views
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA
Sample Size
Outliers
updated 8.7 years ago by
mh.manoj
• 0 • written 9.2 years ago by
brohawndg
▴ 150
11
votes
25
replies
11k
views
readCufflinks problem with extdata
cummerbund
updated 6.6 years ago by
markus.ball
▴ 10 • written 6.8 years ago by
biakemi
▴ 40
1
vote
12
replies
3.2k
views
Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
software error
rcytoscape
xml
updated 9.5 years ago by
drsuuzzz
• 0 • written 9.5 years ago by
alessandro brozzi
▴ 120
0
votes
16
replies
2.6k
views
Finding GO leaf nodes for an ontology - which package?
updated 16.8 years ago by
Seth Falcon
★ 7.4k • written 16.8 years ago by
Tim Smith
★ 1.1k
0
votes
27
replies
2.8k
views
summarizeOverlaps mode ignoring inter feature overlaps
11.1 years ago
Thomas Girke
★ 1.7k
4
votes
21
replies
3.4k
views
RMA normaliztion using XPS
normalization
xps
updated 9.0 years ago by
cstrato
★ 3.9k • written 9.1 years ago by
dhwani.dholakia
• 0
0
votes
10
replies
1.9k
views
ABPkgBuilder Error;
18.8 years ago
Barry Henderson
▴ 250
0
votes
16
replies
2.6k
views
Affy: Present calls in an eset
updated 20.6 years ago by
Stephen Henderson
★ 1.0k • written 20.6 years ago by
Arne.Muller@aventis.com
▴ 620
2
votes
12
replies
2.4k
views
I want to order genes in GO groups
gene ontology
genefilter
updated 8.6 years ago by
b.nota
▴ 360 • written 8.6 years ago by
kanacska
▴ 10
3
votes
12
replies
3.9k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 6.7 years ago by
Thomas Carroll
▴ 420 • written 9.1 years ago by
atisou
• 0
2
votes
15
replies
3.0k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.1 years ago • updated 9.0 years ago
mnaymik
▴ 10
0
votes
10
replies
2.8k
views
read.GenePix not opening connection
Microarray
marray
Microarray
marray
updated 18.9 years ago by
Tony Kowal
▴ 20 • written 18.9 years ago by
Amy Mikhail
▴ 460
6
votes
22
replies
3.9k
views
Oligo package: paCalls questions
microarray
oligo
updated 8.9 years ago by
cstrato
★ 3.9k • written 8.9 years ago by
whyuen
▴ 20
0
votes
12
replies
2.1k
views
KEGGSOAP
KEGGSOAP
KEGGSOAP
updated 18.1 years ago by
Seth Falcon
★ 7.4k • written 18.1 years ago by
Dr.Mayhaus Manuel
▴ 30
1
vote
13
replies
5.7k
views
ERROR: dependency 'GO.db' is not available for package 'systemPipeR'
software error
7.8 years ago
phpaul2010
• 0
0
votes
17
replies
2.2k
views
Coverage by base
Coverage
Coverage
12.6 years ago
rohan bareja
▴ 200
1
vote
21
replies
3.4k
views
Rsubread stopping half-way through align
rsubread
7.8 years ago • updated 7.7 years ago
Campbell.1933
• 0
0
votes
10
replies
2.3k
views
how to revert to an older limma version?
16.8 years ago
Maya Bercovich
▴ 50
4
votes
15
replies
3.0k
views
Converting Synapter object output into a MSnbase-compatible object
synapter
msnbase
8.7 years ago • updated 8.6 years ago
diana.schreier
• 0
0
votes
8
replies
1.6k
views
uppercase & lowercase
updated 16.9 years ago by
Saroj Mohapatra
▴ 450 • written 16.9 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
8
replies
4.2k
views
GSVA: problem with chip annotation
gsva
updated 9.5 years ago by
Robert Castelo
★ 3.3k • written 9.5 years ago by
q017mm
• 0
0
votes
21
replies
5.1k
views
unable to readImage using EBImage package
EBImage
EBImage
updated 12.1 years ago by
Nurdiyanah Jambari
▴ 90 • written 12.2 years ago by
Guest User
★ 13k
7
votes
28
replies
6.1k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread
featurecounts
updated 12 weeks ago by
Gordon Smyth
50k • written 9.2 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
11
replies
6.2k
views
ChAMP input: Beta Matrix?
champ
dmr analysis
updated 3.3 years ago by
坤
• 0 • written 8.2 years ago by
Shicheng Guo
• 0
0
votes
10
replies
4.2k
views
GOStat and multiple testing
GO
GOstats
GO
GOstats
updated 19.7 years ago by
A.J. Rossini
▴ 810 • written 19.8 years ago by
Arne.Muller@aventis.com
▴ 620
0
votes
13
replies
5.9k
views
gage pathways enrichment analysis
gage
pathways
kegg
updated 9.4 years ago by
Luo Weijun
★ 1.6k • written 9.5 years ago by
francesca.defilippis
▴ 100
0
votes
11
replies
2.0k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
VariantAnnotation
Annotation
VariantAnnotation
VariantTools
VariantAnnotation
Annotation
updated 10.4 years ago by
Valerie Obenchain
★ 6.8k • written 10.4 years ago by
Thomas Girke
★ 1.7k
5
votes
14
replies
4.9k
views
gene symbols in Gviz
Gviz
8.8 years ago
Bogdan
▴ 670
0
votes
12
replies
3.3k
views
testing GO categories with Fisher's exact test.
GO
Category
GO
Category
updated 20.2 years ago by
James W. MacDonald
65k • written 20.2 years ago by
Nicholas Lewin-Koh
▴ 430
0
votes
9
replies
3.4k
views
rhdf5 32-bit unsigned int issue
rhdf5
bug
updated 8.8 years ago by
Bernd Fischer
▴ 550 • written 8.9 years ago by
wrob311
• 0
0
votes
10
replies
2.4k
views
Getting rawdata for TMM normalization
normalization
7.8 years ago
humberto_munoz
• 0
0
votes
14
replies
2.4k
views
got 0 significant differential bound (DB)
diffbind
6.9 years ago
mforoo1
• 0
0
votes
10
replies
1.5k
views
Lumi warning and question
16.7 years ago
Ingrid H. G. Østensen
▴ 700
2
votes
30
replies
4.3k
views
ggbio 1.12.0 autoplot() with txdb example is broken
TranscriptDb
TranscriptDb
updated 10.0 years ago by
Tengfei Yin
▴ 490 • written 10.0 years ago by
Leonardo Collado Torres
★ 1.0k
0
votes
9
replies
1.9k
views
Pooling in microarray studies
updated 20.6 years ago by
Tan, MinHan
▴ 180 • written 20.6 years ago by
Wiesner Vos
▴ 50
1
vote
9
replies
3.8k
views
Question about ChiPseeker: plot other values in plotAvgProf2
ChiPseeker
updated 8.5 years ago by
Guangchuang Yu
★ 1.2k • written 8.6 years ago by
francesca casalino
▴ 50
0
votes
8
replies
1.6k
views
info su illumina
updated 18.2 years ago by
Lynn Amon
▴ 110 • written 18.2 years ago by
Alberto Goldoni
▴ 360
2
votes
13
replies
3.1k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
7.7 years ago • updated 7.2 years ago
s.munster
▴ 40
0
votes
10
replies
2.5k
views
Rsubread on Cygwin - error due to gcc ... -D MACOS - why?
Rsubread
updated 7.7 years ago by
Wei Shi
★ 3.6k • written 7.9 years ago by
MWSchmid
• 0
3
votes
9
replies
5.1k
views
DESeq2 results with RUVSeq values
deseq2
ruvseq
sizefacotrs
updated 9.0 years ago by
davide risso
▴ 950 • written 9.0 years ago by
Assa Yeroslaviz
★ 1.5k
1,000 results • Page
1 of 20
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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