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News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
written 7 months ago by
Wei Shi
★ 3.6k
0
votes
0
replies
17
views
Spam:
What are the various factors which make affordable 2 BHK flats in Gurgaon the best option for first-time buyers?
mouse430a2.db
17 days ago
reeltor537
0
0
votes
1
reply
271
views
Job:
Jobs at Ensembl
ensembldb
updated 18 days ago by
frostybuddyy
• 0 • written 7 weeks ago by
Aleena_Ensembl
▴ 30
0
votes
1
reply
435
views
GOseq Probability Weight Function bad fit
goseq
written 5 months ago by
francesca
• 0
0
votes
1
reply
234
views
Job:
Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics (MSCA PF / EMBO)
Epigenetics
JobPosting
Neuroscience
updated 20 days ago by
mudasarnaeem2020
• 0 • written 23 days ago by
lalit.kaurani
• 0
4
votes
4
replies
9.5k
views
Error message that there is no package called Biobase
software error
updated 20 days ago by
DamionLedner99
• 0 • written 8.6 years ago by
mdroog
▴ 10
0
votes
1
reply
372
views
DiffBind plot.profile error
BiocParallel
DiffBind
written 8 months ago by
this_is_me_trying
• 0
0
votes
2
replies
239
views
NUPOP usage
TOAST
written 11 weeks ago by
Mohammad
• 0
0
votes
1
reply
171
views
Chip Seq Analysis of RNA Polymerase 2
ChIPseeker
ChIPSeqData
ChIPSeq
Bioconductor
written 22 days ago by
Gaurav
• 0
0
votes
5
replies
2.3k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
written 10.1 years ago by
john.hu
• 0
0
votes
3
replies
2.5k
views
PCA outliers cleaning
scRNAseq
Pipeline
Seurat
SingleCellExperiment
written 6.3 years ago by
albadrs.93
▴ 10
1
vote
2
replies
3.0k
views
Cleaning GeneSets from GSEA
msigdb
GSEABase
GSVA
written 3.9 years ago by
forlani.luca
• 0
0
votes
1
reply
182
views
Junction CPM via Snapcount and Recount3
snapcount
recount3
written 6 weeks ago by
henry.tietz
• 0
0
votes
1
reply
400
views
News:
The Call for Abstracts for BioC2026 is open!
Bioconductor
Conference
written 24 days ago by
laurah ondari
• 0
4
votes
6
replies
1.7k
views
using limma trend workflow in CAMERA
CAMERA
limma
updated 22 days ago by
Gordon Smyth
53k • written 18 months ago by
Jiahao Tian
• 0
1
vote
2
replies
511
views
News:
Upcoming Ensembl API and data access changes - new blog post available
ensembl
mart
biomaRt
ensembldb
written 12 weeks ago by
Ensembl_Jorge
▴ 10
5
votes
3
replies
726
views
Limma-voom sample weights and impact on DEG numbers
limma
written 9 weeks ago by
A.Barden
▴ 20
0
votes
3
replies
376
views
Confirm that OpenStats will not be archived (pryr dependency)
OpenStats
written 4 weeks ago by
Marina
• 0
0
votes
15
replies
1.6k
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
written 20 months ago by
abhisek001
• 0
20
votes
6
replies
11k
views
Tutorial:
Updated Support Site Editor
support.bioconductor.org
editor
markdown
updates
Tutorial
written 7.1 years ago by
shepherl
4.3k
0
votes
0
replies
14
views
Spam:
PokeChill
customCMPdb
AMOUNTAIN
25 days ago
play
0
0
votes
1
reply
2.6k
views
Tutorial:
[LIBD rstats club] Bioconductor overview
bioconductor
libdrstats
Tutorial
written 5.8 years ago by
Leonardo Collado Torres
★ 1.1k
0
votes
1
reply
303
views
msmsTests, inconsistent sign between lFC.Av and LogFC
msmsTests
Proteomics
27 days ago
Ben
• 0
0
votes
1
reply
193
views
DESeq2 for 16S rRNA Analysis
DESeq2
updated 27 days ago by
James W. MacDonald
68k • written 28 days ago by
lizflor
• 0
0
votes
3
replies
1.7k
views
ChAMP trouble reading csv file
ChAMP
written 2.6 years ago by
Keasiykan
• 0
0
votes
2
replies
2.5k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE
meta-analysis
updated 29 days ago by
varying.mastodon.isyn
• 0 • written 10.0 years ago by
alexvpickering
▴ 110
2
votes
6
replies
630
views
limpa analysis advice
limpa
updated 29 days ago by
Gordon Smyth
53k • written 5 weeks ago by
SamGG
▴ 360
0
votes
1
reply
180
views
News:
Online RNA-seq analysis course 26-29th Janury
EnhancedVolcano
GSEABase
pheatmap
Workshop
DESeq2
written 6 weeks ago by
Frances Turner
▴ 20
0
votes
0
replies
201
views
bcftools norm Equivalent
Rsamtools
4 weeks ago
Dario Strbenac
★ 1.6k
1
vote
2
replies
2.5k
views
AnnotationForge makeOrgPackage rsqlite_send_query error
annotationforge
makeorgpackage
updated 4 weeks ago by
ansley.r.burtch
• 0 • written 8.7 years ago by
marisa.e.miller
▴ 10
0
votes
5
replies
303
views
Lowly expressed genes reported as significant when using lfcThreshold in DESeq
RNASeq
DESeq2
DifferentialExpression
updated 4 weeks ago by
Michael Love
43k • written 4 weeks ago by
Ahmed Salah
• 0
0
votes
2
replies
251
views
lfc shrinkage estimator in DESeq2
DESeq2
written 4 weeks ago by
julia_mcdonough
• 0
2
votes
1
reply
252
views
Array weights in dpcDE
limpa
updated 4 weeks ago by
Gordon Smyth
53k • written 4 weeks ago by
Matt
• 0
0
votes
13
replies
923
views
Making a Full Rank Model for Allele-Specific Expression with DESeq2
DESeq2
updated 4 weeks ago by
Gordon Smyth
53k • written 5 weeks ago by
chp265
• 0
0
votes
2
replies
208
views
Justify title track when rotation = 0
Gviz
gviz
written 5 weeks ago by
Xenia
• 0
0
votes
2
replies
216
views
Bile acid analysis with limpa
limpa
MassSpectrometry
MassSpectrometryData
updated 4 weeks ago by
Gordon Smyth
53k • written 5 weeks ago by
DN
• 0
1
vote
2
replies
449
views
How to install packages such as TCGAbiolinks, SumarizedExperiment?
TCGAbiolinks
SummarizedExperiment
written 8 weeks ago by
NewRUser
• 0
0
votes
1
reply
403
views
Job:
Open Positions for Doctoral Researchers in Molecular Medicine
JobPosting
written 6 weeks ago by
rubina.tabassum
• 0
1
vote
4
replies
1.4k
views
chemmineOB install help
ChemmineOB
Install
updated 4 weeks ago by
Jeremy
• 0 • written 20 months ago by
jrbald04
• 0
0
votes
2
replies
371
views
Are individual-mouse-based statistics possible in CellChat?
Bioconductor
CellChat
updated 4 weeks ago by
LillianaVolkman99
• 0 • written 6 weeks ago by
Omer
• 0
0
votes
2
replies
550
views
Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
flowWorkspace
FlowCytometry
written 7 months ago by
Valeria
• 0
0
votes
2
replies
460
views
Combining two proteomics datasets with limpa
limpa
ProteomicsWorkflow
limma
7 weeks ago • updated 5 weeks ago
Andrew Pattison
• 0
0
votes
7
replies
692
views
limpa-blank normalization and Spectronaut's PTM stoichiometry
limpa
updated 5 weeks ago by
Gordon Smyth
53k • written 6 weeks ago by
emily.wolfrum
• 0
0
votes
1
reply
336
views
DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
shrinkage
DESeq2
contrast
updated 5 weeks ago by
ATpoint
★ 5.0k • written 5 weeks ago by
ja569116
• 0
0
votes
6
replies
740
views
BiocParallel (and DESeq2) - wrong args for environment subassignment
BiocParallel
DESeq2
updated 5 weeks ago by
Martin Morgan
25k • written 12 weeks ago by
Benjamin
• 0
1
vote
4
replies
2.9k
views
Pairwise comparison of multiple groups with different base
deseq2
rna-seq
r
updated 5 weeks ago by
ja569116
• 0 • written 5.8 years ago by
thjnant
▴ 10
0
votes
3
replies
474
views
DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
sva
lfcshrink
DESeq2
9 weeks ago • updated 5 weeks ago
ja569116
• 0
4
votes
2
replies
499
views
When to use edgeR or limma
edgeR
limma
updated 5 weeks ago by
Gordon Smyth
53k • written 6 weeks ago by
abzhang97
• 0
0
votes
2
replies
517
views
Help with defining groups
limpa
updated 6 weeks ago by
Gordon Smyth
53k • written 5 months ago by
Phinney, Brett
▴ 10
2
votes
2
replies
360
views
Post translational modifications and phosphoproteomics in limpa?
limpa
updated 6 weeks ago by
Gordon Smyth
53k • written 3 months ago by
james.eapen
• 0
627 results • Page
2 of 13
Recent ...
Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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