0
votes
0
replies
873
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
2.6 years ago RuBBiT0 ▴ 10
0
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0
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1.1k
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Positive beta-scores of essential genes in drug-treated cells
mageck MAGeCKFlute CrisprScreen
2.6 years ago Monika • 0
0
votes
0
replies
565
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alpha1 in SAFFRON method in onlineFDR package
onlineFDR
2.7 years ago lgomeso • 0
0
votes
0
replies
670
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Title in dba.plotProfile
DiffBind
2.7 years ago agata17 • 0
2
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4
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BiocGenerics binary is outdated for macOS ARM
BiocGenerics
2.7 years ago Michael Steinbaugh ▴ 90
0
votes
6
replies
1.6k
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Merge 2 accounts, or delete 1 account.
Bioconductor ALL
2.7 years ago • updated 2.6 years ago simone.tiberi • 0
0
votes
0
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2.3k
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
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2.7 years ago pg45863 ▴ 10
0
votes
0
replies
751
views
Error while performing DEXseq
DEXSeq
2.7 years ago vipul14 • 0
0
votes
0
replies
629
views
Subsite info is possible for more studies
curatedMetagenomicData
2.7 years ago Vitor Heidrich • 0
1
vote
0
replies
1.1k
views
WGCNA of two different cohorts study
DifferentialExpression WGCNA
updated 2.6 years ago by 43k • written 2.7 years ago by ▴ 20
2
votes
1
reply
1.2k
views
WGCNA: many over and under-expressed features in modules of a signed network
WGCNA wgcna_package
updated 2.7 years ago by ▴ 50 • written 2.7 years ago by ▴ 10
0
votes
1
reply
887
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HiCDCPlus glm.fit error
HiCDCPlus
updated 2.6 years ago by • 0 • written 2.7 years ago by • 0
0
votes
0
replies
873
views
blockwiseConsensusModules won't save individualTOM data?
blockwiseconsensusModules WGCNA consensus
2.7 years ago Levi • 0
1
vote
0
replies
1.1k
views
Fold values in Diffbind
DiffBind
2.7 years ago bhandary.8590 ▴ 20
1
vote
2
replies
1.6k
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 2.7 years ago by ★ 6.6k • written 2.7 years ago by • 0
0
votes
0
replies
1.1k
views
Illumina global SNP screeing array
illuminaHumanv3.db arrays
2.7 years ago DH • 0
1
vote
4
replies
1.4k
views
Submitting BSgenome package for a new assembly
bsgenome GenomicFeatures package
updated 2.6 years ago by 16k • written 2.7 years ago by • 0
0
votes
2
replies
1.2k
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msa Installation failed - please help
Install msa
2.7 years ago Ido • 0
0
votes
0
replies
584
views
'ZygosityPredictor's dependency 'datastructures' missing in R 4.3.0
ZygosityPredictor
updated 2.7 years ago by ★ 4.0k • written 2.7 years ago by • 0
0
votes
2
replies
1.1k
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No compilation on Windows y compilation on linux
Devel PackageType deve
2.7 years ago • updated 2.6 years ago Franck RICHARD • 0
0
votes
0
replies
818
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Help with Diffbind result
DiffBind
2.7 years ago Chris ▴ 20
0
votes
2
replies
1.2k
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ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 22 months ago by • 0 • written 2.7 years ago by • 0
0
votes
0
replies
799
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
2.7 years ago Craig • 0
0
votes
0
replies
609
views
How to get the class ID of patients using ConsensusClusterPlus
ConsensusClusterPlus
2.7 years ago hsin hsiung • 0
0
votes
0
replies
719
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High Memory Usage when running FRASER's countRNAData
FRASER
2.7 years ago jbendik • 0
0
votes
4
replies
2.2k
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BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
2.7 years ago Michael Steinbaugh ▴ 90
0
votes
1
reply
947
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB easyrun error mm10 Mus_musculus_Data
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
votes
3
replies
1.6k
views
Why is RNA-Seq library size not constant among samples?
RNA-Seq sequencer library_size sequency_depth multiplexing offtopic
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
1
vote
11
replies
3.5k
views
BiocParallel 1.33.12 binary has incorrect library linkage on macOS x86
BiocParallel
updated 2.7 years ago by 25k • written 2.7 years ago by ▴ 90
0
votes
0
replies
782
views
Getting the exon co-ordinates and location
exon AnnotationHubData
2.7 years ago mahima.g • 0
0
votes
1
reply
941
views
WGCNA for one perturbation time series (pooled from two independent replicates)?
WGCNA
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by • 0
0
votes
1
reply
982
views
custom annotations with annotatr
annotatr
2.7 years ago luca.s ▴ 50
0
votes
0
replies
1.9k
views
PLSDA : No model was built because the first predictive component was already not significant.
plsda
2.7 years ago MLF • 0
0
votes
0
replies
1.0k
views
Volcano plot
limma AffymetrixChip
2.7 years ago e.gunaut • 0
0
votes
4
replies
1.8k
views
Limma multi-group, nested analysis with aggregation
limma
2.7 years ago • updated 2.5 years ago Jonathan ▴ 10
0
votes
0
replies
972
views
How to speed up pileup from Rsamtools?
Rsamtools pileup
2.7 years ago alexandr.gopanenko ▴ 50
0
votes
0
replies
1.2k
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor riboSeqR
2.7 years ago Javier • 0
0
votes
1
reply
1.0k
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
2.7 years ago Grace • 0
0
votes
1
reply
683
views
Error: package ‘hgu133plus2’
hgu133plus2
updated 2.8 years ago by 4.3k • written 2.8 years ago by • 0
0
votes
0
replies
752
views
Shifted volcano plot after RankProd
rankp RankProd
2.8 years ago Alessia • 0
1
vote
0
replies
825
views
Typo in GO.db manual reference
GO.db
2.8 years ago RuBBiT0 ▴ 10
0
votes
0
replies
1.0k
views
Problems with the input (from TPM) - How to remove isoforms in WGCNA
Arabidopsis_thaliana removeisoforms WGCNA
2.8 years ago • updated 2.7 years ago Ortega-C ▴ 10
0
votes
2
replies
1.2k
views
WGCNA problem
WGCNA
updated 2.8 years ago by ▴ 10 • written 2.8 years ago by • 0
0
votes
0
replies
1.1k
views
How to extract P-Values and LogFC from lrTest in MAST?
pvalue logFC lrtest MAST
2.8 years ago Tadeoye ▴ 20
0
votes
1
reply
1.2k
views
Unable to create pd file for ChAMP analysis
ChAMP
updated 19 months ago by • 0 • written 2.8 years ago by • 0
1
vote
0
replies
970
views
Make custom Txdb class objects from Txdb
GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene
2.8 years ago Shreyash ▴ 10
0
votes
1
reply
1.2k
views
scRNAseq Download Errors
scRNAseq
updated 2.8 years ago by 4.3k • written 2.8 years ago by ★ 1.6k
0
votes
0
replies
748
views
Cannot generate plots when calling ChAMP
ChAMP DMP.GUI
2.8 years ago Kan • 0
0
votes
0
replies
620
views
Gene A mutation vs Gene B amplification using TCGA datasets
TCGAWorkflow
2.8 years ago Begin-R • 0
0
votes
0
replies
875
views
Reading FCS files using read.FCS
read.FCS read.flowSet
2.8 years ago Pilid • 0
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