0
votes
0
replies
734
views
Error while performing DEXseq
DEXSeq
2.6 years ago vipul14 • 0
0
votes
0
replies
623
views
Subsite info is possible for more studies
curatedMetagenomicData
2.6 years ago Vitor Heidrich • 0
1
vote
0
replies
1.1k
views
WGCNA of two different cohorts study
DifferentialExpression WGCNA
updated 2.6 years ago by 43k • written 2.6 years ago by ▴ 20
2
votes
1
reply
1.2k
views
WGCNA: many over and under-expressed features in modules of a signed network
WGCNA wgcna_package
updated 2.6 years ago by ▴ 50 • written 2.6 years ago by ▴ 10
0
votes
1
reply
874
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 2.6 years ago by • 0 • written 2.6 years ago by • 0
0
votes
0
replies
853
views
blockwiseConsensusModules won't save individualTOM data?
blockwiseconsensusModules WGCNA consensus
2.6 years ago Levi • 0
1
vote
0
replies
1.1k
views
Fold values in Diffbind
DiffBind
2.6 years ago bhandary.8590 ▴ 20
1
vote
2
replies
1.6k
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 2.6 years ago by ★ 6.6k • written 2.6 years ago by • 0
0
votes
0
replies
1.0k
views
Illumina global SNP screeing array
illuminaHumanv3.db arrays
2.6 years ago DH • 0
1
vote
4
replies
1.4k
views
Submitting BSgenome package for a new assembly
bsgenome GenomicFeatures package
updated 2.6 years ago by 16k • written 2.6 years ago by • 0
0
votes
2
replies
1.2k
views
msa Installation failed - please help
Install msa
2.6 years ago Ido • 0
0
votes
0
replies
578
views
'ZygosityPredictor's dependency 'datastructures' missing in R 4.3.0
ZygosityPredictor
updated 2.6 years ago by ★ 4.0k • written 2.6 years ago by • 0
0
votes
2
replies
1.0k
views
No compilation on Windows y compilation on linux
Devel PackageType deve
2.6 years ago Franck RICHARD • 0
0
votes
0
replies
811
views
Help with Diffbind result
DiffBind
2.7 years ago Chris ▴ 20
0
votes
2
replies
1.2k
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 21 months ago by • 0 • written 2.7 years ago by • 0
0
votes
0
replies
772
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
2.7 years ago Craig • 0
0
votes
0
replies
603
views
How to get the class ID of patients using ConsensusClusterPlus
ConsensusClusterPlus
2.7 years ago hsin hsiung • 0
0
votes
0
replies
710
views
High Memory Usage when running FRASER's countRNAData
FRASER
2.7 years ago jbendik • 0
0
votes
4
replies
2.1k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
2.7 years ago Michael Steinbaugh ▴ 90
0
votes
1
reply
941
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB easyrun error mm10 Mus_musculus_Data
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
votes
3
replies
1.6k
views
Why is RNA-Seq library size not constant among samples?
RNA-Seq sequencer library_size sequency_depth multiplexing offtopic
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
1
vote
11
replies
3.5k
views
BiocParallel 1.33.12 binary has incorrect library linkage on macOS x86
BiocParallel
updated 2.7 years ago by 25k • written 2.7 years ago by ▴ 90
0
votes
0
replies
771
views
Getting the exon co-ordinates and location
exon AnnotationHubData
2.7 years ago mahima.g • 0
0
votes
1
reply
930
views
WGCNA for one perturbation time series (pooled from two independent replicates)?
WGCNA
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by • 0
0
votes
1
reply
974
views
custom annotations with annotatr
annotatr
2.7 years ago luca.s ▴ 50
0
votes
0
replies
1.9k
views
PLSDA : No model was built because the first predictive component was already not significant.
plsda
2.7 years ago MLF • 0
0
votes
0
replies
1.0k
views
Volcano plot
limma AffymetrixChip
2.7 years ago e.gunaut • 0
0
votes
4
replies
1.8k
views
Limma multi-group, nested analysis with aggregation
limma
2.7 years ago • updated 2.4 years ago Jonathan ▴ 10
0
votes
0
replies
959
views
How to speed up pileup from Rsamtools?
Rsamtools pileup
2.7 years ago alexandr.gopanenko ▴ 50
0
votes
0
replies
1.2k
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor riboSeqR
2.7 years ago Javier • 0
0
votes
1
reply
1.0k
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
2.7 years ago Grace • 0
0
votes
1
reply
675
views
Error: package ‘hgu133plus2’
hgu133plus2
updated 2.7 years ago by 4.3k • written 2.7 years ago by • 0
0
votes
0
replies
744
views
Shifted volcano plot after RankProd
rankp RankProd
2.7 years ago Alessia • 0
1
vote
0
replies
796
views
Typo in GO.db manual reference
GO.db
2.7 years ago RuBBiT0 ▴ 10
0
votes
0
replies
1.0k
views
Problems with the input (from TPM) - How to remove isoforms in WGCNA
Arabidopsis_thaliana removeisoforms WGCNA
2.7 years ago Ortega-C ▴ 10
0
votes
2
replies
1.2k
views
WGCNA problem
WGCNA
updated 2.7 years ago by ▴ 10 • written 2.7 years ago by • 0
0
votes
0
replies
1.0k
views
How to extract P-Values and LogFC from lrTest in MAST?
pvalue logFC lrtest MAST
2.7 years ago Tadeoye ▴ 20
0
votes
1
reply
1.2k
views
Unable to create pd file for ChAMP analysis
ChAMP
updated 18 months ago by • 0 • written 2.7 years ago by • 0
1
vote
0
replies
947
views
Make custom Txdb class objects from Txdb
GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene
2.7 years ago Shreyash ▴ 10
0
votes
1
reply
1.1k
views
scRNAseq Download Errors
scRNAseq
updated 2.7 years ago by 4.3k • written 2.7 years ago by ★ 1.6k
0
votes
0
replies
736
views
Cannot generate plots when calling ChAMP
ChAMP DMP.GUI
2.7 years ago Kan • 0
0
votes
0
replies
614
views
Gene A mutation vs Gene B amplification using TCGA datasets
TCGAWorkflow
2.7 years ago Begin-R • 0
0
votes
0
replies
868
views
Reading FCS files using read.FCS
read.FCS read.flowSet
2.7 years ago Pilid • 0
0
votes
1
reply
785
views
Sample expression calculation in rna seq
Rnaseq
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by • 0
0
votes
0
replies
880
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
2.7 years ago Priya • 0
0
votes
2
replies
1.4k
views
error in champ.SVD
svd methylation champ
updated 2.7 years ago by 4.3k • written 2.7 years ago by • 0
0
votes
1
reply
1.3k
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea EGSEA123
2.7 years ago neilzhao ▴ 30
0
votes
0
replies
959
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
2.7 years ago aymanreffai • 0
2
votes
0
replies
2.7k
views
How to aggregate pseudobulks: Normalization & Log-Transformation
pseudobulk scRNAseq GSVA
2.7 years ago Tadeoye ▴ 20
0
votes
0
replies
993
views
Manually adjusting BCV for exactTest in edgeR based on plotBCV
edgeR
2.7 years ago f_rahmdani • 0
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Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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