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Creation
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Views
Votes
1
vote
9
replies
3.0k
views
Dotplots for differential gene expression data ?
clusterprofiler
3.9 years ago
sunnykevin97
• 0
3
votes
9
replies
3.8k
views
champ.runCombat is failing: "invalid 'row.names' length"
champ
5.8 years ago
Gurkenkönig
▴ 10
7
votes
9
replies
1.7k
views
codelink package is not installing
codelink
r
9.1 years ago
Agaz Hussain Wani
▴ 260
0
votes
9
replies
3.0k
views
clusterProfiler-GO enrichment Error
Aaltissimus
updated 2.1 years ago by
Guido Hooiveld
★ 4.0k • written 2.2 years ago by
SongW
• 0
2
votes
9
replies
7.5k
views
Multiple alignments (multi-mapped reads) and DESeq/edgeR pipeline
deseq
deseq2
edger
tophat
bowtie
8.9 years ago
ysdel
▴ 40
1
vote
9
replies
2.4k
views
Handling DNA sequence loaded from a file
r
biostrings
DNAsequence
updated 23 months ago by
James W. MacDonald
65k • written 8.1 years ago by
Agaz Hussain Wani
▴ 260
0
votes
9
replies
2.4k
views
Question about Agilent microarray data measurement
Agilent
limma
scan.upc
microarray
7.5 years ago
Maximilian
▴ 10
1
vote
9
replies
2.5k
views
errors in namespaceExports during biocLite installs
biocinstaller
installation
9.1 years ago
shabbychef
• 0
2
votes
9
replies
2.1k
views
STRINGdb images very low quality?
STRINGdb
updated 2.4 years ago by
damian.szk
▴ 80 • written 2.5 years ago by
jarod
▴ 30
0
votes
9
replies
1.9k
views
RforProteomics workflow troubleshooting
proteomics
7.9 years ago
yockpingchow
• 0
3
votes
9
replies
2.3k
views
problem for finding soft thresholding in WGCNA algorithm
wgcna
abline function
Scale independence diagram
5.6 years ago
modarzi
▴ 10
0
votes
9
replies
2.2k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
rna seq
▴ 90
0
votes
9
replies
1.7k
views
Unable to find solution: low coverage
PureCN
fatal error
no solution
6.0 years ago
twtoal
▴ 10
0
votes
8
replies
2.1k
views
DEXSeqHTML Output Trouble
dexseq
dexseqhtml
8.2 years ago
skasowitz
• 0
0
votes
8
replies
3.4k
views
featureCounts Returns 0.0% successfully assigned fragments
rsubread
featurecounts
5.9 years ago
connor.geraghty
• 0
0
votes
8
replies
1.2k
views
Question on bgzf_read error
diffbind
4.5 years ago
Kath
• 0
2
votes
8
replies
2.4k
views
Reading HDF5 Files In The Cloud
Rhdf5lib
rhdf5
3.2 years ago • updated 9 months ago
Thomas Sandmann
▴ 90
0
votes
8
replies
1.1k
views
Question about Diffbind counts
DiffBind
16 months ago
slrpatty
• 0
0
votes
8
replies
1.6k
views
DropletUtils::read10xCounts error
read10xCounts
DropletUtils
16 months ago
fdumetz
• 0
1
vote
8
replies
3.2k
views
Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't have a valid EOF block.
Rsubread
2.6 years ago • updated 2.5 years ago
v.merino.nicolas
▴ 10
3
votes
8
replies
2.6k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData
AnnotationForge
2.1 years ago
Saber_J
▴ 10
0
votes
8
replies
2.6k
views
Usecase_AnnotationHub_GRanges.Rmd, genes = qhs[[1]] can't download UCSC 'refGene'. - Window 7, R 3.2.1, RStudio 0.99.484
annotationhub
bioconductor for genomic data science
8.7 years ago
J.C. SUN
• 0
2
votes
8
replies
4.9k
views
GDCquery_Maf error
TCGAbiolinks
GDCquery_Maf
updated 21 months ago by
1526466763
• 0 • written 2.1 years ago by
e.iich
• 0
1
vote
8
replies
2.3k
views
ReactomePA gsePathway - a couple of questions regarding the input and output
reactomepa
7.1 years ago
juls
• 0
2
votes
8
replies
1.7k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis
pcair
6.0 years ago
GENOMIC_region
• 0
7
votes
8
replies
3.8k
views
R failing to load genome files from EnsDb.Hsapiens.v86
tximport
ensembldb
EnsDB.hsapiens.v86
updated 5.4 years ago by
Bioconductor Community
0 • written 5.5 years ago by
michaelschoeber
▴ 20
0
votes
8
replies
1.5k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.3 years ago
alipka
▴ 10
3
votes
8
replies
26k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade
Rstudio
Bioconductor
R3.2.2
8.5 years ago
svlachavas
▴ 830
2
votes
8
replies
943
views
Reason for NA in table after beta regression?
biseq
beta regression
3.9 years ago
akhaira
• 0
1
vote
8
replies
1.2k
views
Can't install 'pqsfinder'
pqsfinder
5.2 years ago
aabarnes2
• 0
0
votes
8
replies
1.9k
views
Error, could not find function"file.edit", the install problem
illuminaHumanv2.db
4.9 years ago
JXG1819
• 0
2
votes
8
replies
2.5k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 2.1 years ago by
Martin Morgan
25k • written 2.1 years ago by
ZheFrench
▴ 60
3
votes
8
replies
1.3k
views
please someone help me to run this code
software error
R
8.3 years ago
Angel
▴ 40
2
votes
8
replies
2.0k
views
Error: se does not inherit from class SummarizedExperiment
DEP
SummarizedExperiment
4.8 years ago
Wuschel
▴ 10
0
votes
8
replies
1.9k
views
error in RnBeads installation
Epigenetics
RnBeads
R
2.2 years ago
Jitendra
▴ 10
10
votes
8
replies
3.0k
views
Best alternative annotation package to BiomaRt
R
biomaRt
Ensembl
rnaseq
4.9 years ago
m93
▴ 10
2
votes
8
replies
1.7k
views
lpsymphony install on Ubuntu
lpsymphony
7.2 years ago
Michael Love
42k
0
votes
8
replies
383
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 22 days ago by
swbarnes2
★ 1.4k • written 24 days ago by
Aaliya
• 0
0
votes
8
replies
1.2k
views
Failed to read SDRF
software error
arrayexpressHTS
4.2 years ago
Ed Siefker
▴ 230
0
votes
7
replies
2.3k
views
makeTxDbFromGFF yields an empty TxDb
annotation
maketxdbfromgff
genomicfeatures
8.6 years ago
José Luis Lavín
▴ 10
0
votes
7
replies
1.9k
views
GO.db installation problems with BiocManager in R
R
Bioconductor
5.2 years ago
d.m.j.thorburn
• 0
1
vote
7
replies
1.8k
views
Error using champ.import
ChAMP
EPICv2
updated 4 weeks ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
0
votes
7
replies
1.6k
views
RankProd crashing - stability issues?
rankprod
crash
6.9 years ago
bhgyu
▴ 30
8
votes
7
replies
1.2k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 5 months ago by
Daniel E. Weeks
▴ 30
1
vote
7
replies
1.5k
views
query regarding error in installation of "goseq" R bioconductor package
R
Bioconductor
Install
updated 17 months ago by
shepherl
3.9k • written 17 months ago by
abhisek001
• 0
0
votes
7
replies
1.9k
views
Problem with fgsea
fgsea
updated 2.1 years ago by
alserg
▴ 260 • written 2.1 years ago by
Barista
• 0
0
votes
7
replies
1.8k
views
Error in loading rsbml
rsbml
BiGGR
7.9 years ago
enrico.moiso
• 0
2
votes
7
replies
2.7k
views
DESeq(): Forking of R Process even though parallel=FALSE
DESeq2
biocparallel
updated 7.7 years ago by
Michael Love
42k • written 7.7 years ago by
frank.staemmler
• 0
0
votes
7
replies
3.2k
views
Mouse GSEA Analysis
clusterProfiler
updated 17 months ago by
Michael Love
42k • written 18 months ago by
Rob
• 0
1
vote
7
replies
2.2k
views
Error with slingshot slingPseudotime and slingCurveWeights after using fitGAM from tradeSeq
tradeSeq
slingshot
22 months ago • updated 21 months ago
manduchi
▴ 10
1,000 results • Page
2 of 20
Recent ...
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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