0
votes
9
replies
2.6k
views
mapping FASTQ files to single gene (fluorescent reporter)
rsubread alignment align
5.4 years ago A ▴ 40
7
votes
9
replies
1.7k
views
codelink package is not installing
codelink r
9.1 years ago Agaz Hussain Wani ▴ 260
0
votes
9
replies
2.9k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
5.7 years ago goh • 0
2
votes
9
replies
7.5k
views
Multiple alignments (multi-mapped reads) and DESeq/edgeR pipeline
deseq deseq2 edger tophat bowtie
8.9 years ago ysdel ▴ 40
0
votes
9
replies
2.9k
views
clusterProfiler-GO enrichment Error
Aaltissimus
updated 2.0 years ago by ★ 3.9k • written 2.1 years ago by • 0
1
vote
9
replies
2.4k
views
Handling DNA sequence loaded from a file
r biostrings DNAsequence
updated 23 months ago by 65k • written 8.1 years ago by ▴ 260
1
vote
9
replies
2.5k
views
Removing batch effects from microarray data based on only a subset of samples
limma removebatcheffect() ComBat microarray
6.3 years ago jaro.slamecka ▴ 140
0
votes
9
replies
2.2k
views
problem using >3 clusters with Quasr
quasr parallel
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 90
2
votes
9
replies
2.1k
views
STRINGdb images very low quality?
STRINGdb
updated 2.3 years ago by ▴ 80 • written 2.4 years ago by ▴ 30
0
votes
9
replies
1.8k
views
RforProteomics workflow troubleshooting
proteomics
7.9 years ago yockpingchow • 0
3
votes
9
replies
2.3k
views
problem for finding soft thresholding in WGCNA algorithm
wgcna abline function Scale independence diagram
5.6 years ago modarzi ▴ 10
0
votes
9
replies
1.4k
views
AnnotationHub: failed to load resource name
DFP
2.8 years ago hxwanghxw • 0
0
votes
9
replies
2.3k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
7.5 years ago Maximilian ▴ 10
0
votes
8
replies
2.1k
views
DEXSeqHTML Output Trouble
dexseq dexseqhtml
8.1 years ago skasowitz • 0
0
votes
8
replies
3.3k
views
featureCounts Returns 0.0% successfully assigned fragments
rsubread featurecounts
5.9 years ago connor.geraghty • 0
0
votes
8
replies
1.1k
views
Question on bgzf_read error
diffbind
4.5 years ago Kath • 0
2
votes
8
replies
2.4k
views
Reading HDF5 Files In The Cloud
Rhdf5lib rhdf5
3.2 years ago • updated 8 months ago Thomas Sandmann ▴ 90
1
vote
8
replies
1.2k
views
Can't install 'pqsfinder'
pqsfinder
5.2 years ago aabarnes2 • 0
3
votes
8
replies
1.3k
views
please someone help me to run this code
software error R
8.3 years ago Angel ▴ 40
0
votes
8
replies
2.6k
views
Usecase_AnnotationHub_GRanges.Rmd, genes = qhs[[1]] can't download UCSC 'refGene'. - Window 7, R 3.2.1, RStudio 0.99.484
annotationhub bioconductor for genomic data science
8.7 years ago J.C. SUN • 0
7
votes
8
replies
3.7k
views
R failing to load genome files from EnsDb.Hsapiens.v86
tximport ensembldb EnsDB.hsapiens.v86
updated 5.3 years ago by 0 • written 5.5 years ago by ▴ 20
1
vote
8
replies
3.2k
views
Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't have a valid EOF block.
Rsubread
2.5 years ago v.merino.nicolas ▴ 10
2
votes
8
replies
4.9k
views
GDCquery_Maf error
TCGAbiolinks GDCquery_Maf
updated 21 months ago by • 0 • written 2.1 years ago by • 0
1
vote
8
replies
2.2k
views
ReactomePA gsePathway - a couple of questions regarding the input and output
reactomepa
7.1 years ago juls • 0
10
votes
8
replies
3.0k
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
4.8 years ago m93 ▴ 10
0
votes
8
replies
1.5k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.2 years ago alipka ▴ 10
2
votes
8
replies
936
views
Reason for NA in table after beta regression?
biseq beta regression
3.9 years ago • updated 3.8 years ago akhaira • 0
0
votes
8
replies
356
views
DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 12 days ago by ★ 1.3k • written 14 days ago by • 0
0
votes
8
replies
1.9k
views
Error, could not find function"file.edit", the install problem
illuminaHumanv2.db
4.9 years ago JXG1819 • 0
2
votes
8
replies
1.7k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
6.0 years ago GENOMIC_region • 0
2
votes
8
replies
2.5k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache biomaRt
updated 2.1 years ago by 25k • written 2.1 years ago by ▴ 50
2
votes
8
replies
1.6k
views
lpsymphony install on Ubuntu
lpsymphony
7.2 years ago Michael Love 42k
2
votes
8
replies
1.9k
views
Error: se does not inherit from class SummarizedExperiment
DEP SummarizedExperiment
4.8 years ago Wuschel ▴ 10
3
votes
8
replies
26k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade Rstudio Bioconductor R3.2.2
8.5 years ago svlachavas ▴ 830
3
votes
8
replies
2.6k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData AnnotationForge
2.0 years ago Saber_J ▴ 10
0
votes
8
replies
1.1k
views
Question about Diffbind counts
DiffBind
16 months ago • updated 15 months ago slrpatty • 0
0
votes
8
replies
1.6k
views
DropletUtils::read10xCounts error
read10xCounts DropletUtils
16 months ago • updated 15 months ago fdumetz • 0
0
votes
8
replies
1.9k
views
error in RnBeads installation
Epigenetics RnBeads R
2.2 years ago • updated 2.1 years ago Jitendra ▴ 10
0
votes
8
replies
1.2k
views
Failed to read SDRF
software error arrayexpressHTS
4.2 years ago Ed Siefker ▴ 230
0
votes
7
replies
2.3k
views
makeTxDbFromGFF yields an empty TxDb
annotation maketxdbfromgff genomicfeatures
8.5 years ago José Luis Lavín ▴ 10
0
votes
7
replies
1.9k
views
GO.db installation problems with BiocManager in R
R Bioconductor
5.1 years ago d.m.j.thorburn • 0
1
vote
7
replies
1.4k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 17 months ago by 3.9k • written 17 months ago by • 0
0
votes
7
replies
408
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
5 weeks ago needNGS • 0
0
votes
7
replies
1.8k
views
Problem with fgsea
fgsea
updated 2.1 years ago by ▴ 260 • written 2.1 years ago by • 0
0
votes
7
replies
1.5k
views
Problem using load_raw() function in crossmeta R package
cross meta-analysis crossmeta
3.2 years ago michael.s • 0
2
votes
7
replies
2.1k
views
ggbio, RnBeads and 3.2.2
ggbio rnbeads rversion3.2.2
8.4 years ago areyoujokingme • 0
0
votes
7
replies
1.8k
views
Error in loading rsbml
rsbml BiGGR
7.9 years ago enrico.moiso • 0
1
vote
7
replies
1.1k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
4.3 years ago stephen.pollo • 0
2
votes
7
replies
2.7k
views
DESeq(): Forking of R Process even though parallel=FALSE
DESeq2 biocparallel
updated 7.6 years ago by 42k • written 7.6 years ago by • 0
0
votes
7
replies
3.1k
views
Mouse GSEA Analysis
clusterProfiler
updated 17 months ago by 42k • written 18 months ago by • 0
1,000 results • Page 2 of 20
Recent ...
Replies
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and gives inflated significance, as we showed in our 2012 pap…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Awards • All
Popular Question to Gyan Prakash Mishra ▴ 10
Popular Question to Gordon Smyth 50k
Popular Question to WouterDeCoster ▴ 130
Scholar to Michael Love 42k
Popular Question to Malcolm Cook ★ 1.6k
Locations • All
WEHI, Melbourne, Australia, 6 minutes ago
INDIA, 14 minutes ago
United States, 17 minutes ago
Sweden, 25 minutes ago
EMBL Heidelberg, 31 minutes ago
Traffic: 649 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6