Showing : BioCManager • reset
12
votes
33
replies
29k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.1 years ago by 65k • written 3.0 years ago by ▴ 60
9
votes
32
replies
6.2k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.0 years ago by 16k • written 5.0 years ago by • 0
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 90
6
votes
6
replies
6.8k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 2.8 years ago by • 0 • written 3.0 years ago by 6.7k
5
votes
6
replies
2.5k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 3.5 years ago by 25k • written 3.6 years ago by ▴ 90
5
votes
2
replies
912
views
can't install DESeq2 ("unable to access index for repository")
biocmanager DESeq2
9 months ago Alessia ▴ 40
4
votes
13
replies
3.8k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 16 months ago by ★ 5.2k • written 23 months ago by • 0
4
votes
9
replies
2.4k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 10
3
votes
5
replies
1.2k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 10 months ago by 6.7k • written 10 months ago by ▴ 20
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.1 years ago dakarai_esgdaille ▴ 10
3
votes
4
replies
2.0k
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 5.5 years ago by 3.9k • written 5.5 years ago by • 0
2
votes
4
replies
2.2k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 17 months ago by • 0
2
votes
1
reply
4.0k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 23 months ago by 690 • written 23 months ago by ▴ 10
2
votes
3
replies
1.9k
views
Unable to install BiocManager
BiocManager
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 10
1
vote
2
replies
2.2k
views
I can't install the pasilla package
pasilla biocmanager
updated 5.5 years ago by 65k • written 5.5 years ago by ▴ 20
1
vote
5
replies
3.0k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
1
vote
1
reply
1.0k
views
GenomicFeatures won't install for 3.8 release
installation biocmanager
updated 5.5 years ago by 3.9k • written 5.5 years ago by ▴ 90
1
vote
6
replies
11k
views
Cannot install Bioconductor Packages. Cannot install BiocManager.
software error bioconductor biocmanager
updated 5.5 years ago by 3.9k • written 5.5 years ago by ▴ 10
1
vote
6
replies
2.5k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran biocinstaller biocmanager
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 130
1
vote
3
replies
1.3k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 4.5 years ago by 25k • written 4.5 years ago by ★ 2.4k
1
vote
21
replies
5.2k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 4.0 years ago by ▴ 60
1
vote
3
replies
4.3k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
1
vote
6
replies
3.1k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 10
1
vote
3
replies
1.2k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
3.3 years ago adklts • 0
1
vote
6
replies
1.7k
views
Problems installing BiocManager
BiocManager
2.1 years ago ksci ▴ 20
1
vote
3
replies
5.5k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 16 months ago by 3.9k • written 17 months ago by • 0
1
vote
2
replies
1.2k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 2.9 years ago by 65k • written 3.0 years ago by • 0
1
vote
5
replies
1.5k
views
EBImage installation problem
BiocManager
updated 2.0 years ago by 6.7k • written 2.0 years ago by • 0
0
votes
1
reply
844
views
BiocManager::install() update change from biocLite()
BiocManager
4.6 years ago howarth.mailing.lists ▴ 10
0
votes
4
replies
1.5k
views
BiocManager::install() breaks; can't install bioc-devel
biocmanager installation
5.7 years ago Kyle Johnsen ▴ 30
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.3 years ago by 65k • written 3.3 years ago by ▴ 10
0
votes
2
replies
900
views
I cannot install the splatter on colab
splatter biocmanager
written 3.2 years ago by • 0
0
votes
2
replies
2.1k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
0
votes
3
replies
1.2k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 18 months ago by 6.7k • written 18 months ago by • 0
0
votes
13
replies
2.6k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 20
0
votes
4
replies
1.4k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by • 0
0
votes
2
replies
1.3k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
2.3 years ago f1014063507 • 0
0
votes
0
replies
308
views
News: CRAN downtime
BiocManager Bioconductor
6 months ago shepherl 3.9k
0
votes
2
replies
2.8k
views
Problem installing scater
scater R biocmanager bioconductor
updated 5.4 years ago by ★ 28k • written 5.4 years ago by • 0
0
votes
5
replies
1.7k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
4.5 years ago wang.lingjue • 0
0
votes
1
reply
2.9k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 19 months ago by 3.9k • written 19 months ago by • 0
0
votes
4
replies
921
views
Unable to install BiocManager
Biocmanager R
updated 13 months ago by ▴ 50 • written 13 months ago by • 0
0
votes
3
replies
4.5k
views
Rhdf5lib install problems
R bioconductor rhdf5 biocmanager 3.5
5.5 years ago cem45 • 0
0
votes
2
replies
3.3k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 17 months ago by 65k • written 17 months ago by • 0
0
votes
1
reply
663
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 22 months ago by ▴ 780 • written 22 months ago by • 0
0
votes
4
replies
839
views
Error installing Bioc
clusterProfiler Bioconductor BiocManager
updated 18 months ago by ★ 4.0k • written 18 months ago by • 0
0
votes
2
replies
765
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 17 months ago by • 0
0
votes
3
replies
3.7k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
2.0 years ago Olivia • 0
0
votes
3
replies
955
views
Installation path not writable
ebimage biocmanager
updated 4.3 years ago by 65k • written 4.3 years ago by • 0
0
votes
1
reply
1.6k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 4.2 years ago by 3.9k • written 4.2 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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