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BiocInstaller
•
reset
0
votes
20
replies
12k
views
BiocInstaller’ is not available (for R version 3.2.2)
biocinstaller
8.7 years ago
anikumar.murugan
• 0
1
vote
14
replies
11k
views
Unable to connect from R 3.2.2
biocinstaller
source
8.5 years ago
michel.renou
• 0
0
votes
12
replies
2.1k
views
MacOS Package installation problems
BiocInstaller
BiocInstaller
updated 11.9 years ago by
Chinedu Orekie
▴ 10 • written 11.9 years ago by
Michael Salbaum
▴ 80
3
votes
11
replies
6.3k
views
Problems getting Bioc 3.1 after upgrade to R_3.2.0
biocinstaller
r update
9.0 years ago
meeta.mistry
▴ 30
1
vote
11
replies
4.7k
views
Error when install ggbio
ggbio
biocinstaller
updated 8.3 years ago by
Livia Rasp
• 0 • written 8.4 years ago by
syrttgump
▴ 20
1
vote
10
replies
5.0k
views
Rsubread package not available? Warning resolved
affxparser
Rsubread
BiocInstaller
affxparser
Rsubread
BiocInstaller
updated 12.4 years ago by
Wei Shi
★ 3.6k • written 12.4 years ago by
NDowell
▴ 20
1
vote
9
replies
2.5k
views
errors in namespaceExports during biocLite installs
biocinstaller
installation
9.1 years ago
shabbychef
• 0
0
votes
9
replies
2.5k
views
ggbio: error when updating to current release version
BiocInstaller
ggbio
BiocInstaller
ggbio
updated 12.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.0 years ago by
Juan L. Mateo
▴ 80
2
votes
9
replies
1.8k
views
broken download for source tarball of BiocInstaller 1.16.3
download
biocinstaller
8.9 years ago
kenneth.hoste
▴ 20
3
votes
7
replies
2.5k
views
Workflows in BioC 3.2
workflows
installation
biocinstaller
updated 8.3 years ago by
angela.oliveira.pisco
• 0 • written 8.5 years ago by
davide risso
▴ 950
0
votes
7
replies
1.7k
views
Install error affxparser for R 2.15
PROcess
affxparser
BiocInstaller
PROcess
affxparser
BiocInstaller
updated 12.1 years ago by
Dan Tenenbaum
★ 8.2k • written 12.1 years ago by
David Ruau
▴ 60
0
votes
7
replies
3.0k
views
BiocInstaller wants version of R that is not available yet
bioconductor
error
biocinstaller
package installation
install
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
matt.s.leslie
• 0
2
votes
7
replies
3.3k
views
Bioconductor installing pakage error, R 3.4.2, Ubuntu 17.10
bioconductor
biocinstaller
package installation
6.5 years ago
martyferr90
▴ 20
0
votes
6
replies
2.2k
views
error installing Rgraphviz
Rgraphviz
PROcess
BiocInstaller
Rgraphviz
PROcess
BiocInstaller
updated 11.9 years ago by
Dan Tenenbaum
★ 8.2k • written 11.9 years ago by
Mark Miller
▴ 10
1
vote
6
replies
2.5k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran
biocinstaller
biocmanager
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
Kevin Ushey
▴ 130
0
votes
6
replies
2.2k
views
[Bioc-devel] XML package downloading problem with bioconductor.org
Cancer
BiocInstaller
Cancer
BiocInstaller
updated 12.6 years ago by
Liu,Bin
▴ 50 • written 12.6 years ago by
Vincent J. Carey, Jr.
6.7k
0
votes
6
replies
2.5k
views
Error when using the nsFilter command in the genefilter package
miRNA
Annotation
microRNA
BiocInstaller
miRNA
Annotation
microRNA
BiocInstaller
12.4 years ago
Peter Davidsen
▴ 210
0
votes
6
replies
1.7k
views
Illumina Methylation Manifest Install
Install
biocinstaller
package installation
6.0 years ago
julieumn
• 0
5
votes
5
replies
2.4k
views
package 'BiocInstaller' is not available (for R version 3.4.4)
BiocInstaller
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
Kevin
• 0
5
votes
5
replies
2.2k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite
package installation
withr
biocinstaller
rhtslib
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
merv
▴ 120
0
votes
5
replies
9.3k
views
Cannot install clusterProfiler
clusterprofiler
biocinstaller
updated 2.4 years ago by
thkapell
▴ 10 • written 6.0 years ago by
dtatarak
• 0
1
vote
5
replies
1.6k
views
Making package compatible with old version of R/Bioconductor
bioconductor
R
software error
biocinstaller
7.9 years ago
gabriel.hoffman
▴ 110
8
votes
5
replies
1.9k
views
Trouble installing bioconductor
biocinstaller
installation
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
will.b.porterfield
▴ 50
0
votes
5
replies
3.8k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller
installation
install
source
conda
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
jol.espinoz
▴ 40
1
vote
5
replies
2.7k
views
bioclite lib.loc and R_LIBS_USER
biocinstaller
8.8 years ago
Janet Young
▴ 740
0
votes
4
replies
1.5k
views
BiocInstaller fails to load with older R within a 'suppressMessages()' context
biocinstaller
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Kevin Ushey
▴ 130
0
votes
4
replies
2.4k
views
tcltk package for R 2.14.1
affylmGUI
BiocInstaller
affylmGUI
BiocInstaller
updated 12.3 years ago by
Dan Tenenbaum
★ 8.2k • written 12.3 years ago by
Chintan Vora - Xcelris
▴ 70
0
votes
4
replies
2.7k
views
GEOquery loading error
hgu133plus2
GEOquery
BiocInstaller
hgu133plus2
GEOquery
BiocInstaller
updated 11.9 years ago by
Dan Tenenbaum
★ 8.2k • written 11.9 years ago by
Guest User
★ 13k
0
votes
4
replies
1.8k
views
Problem in installing Rgraphviz
Rgraphviz
BiocInstaller
Rgraphviz
BiocInstaller
updated 10.9 years ago by
Steve Lianoglou
★ 13k • written 10.9 years ago by
Guest User
★ 13k
0
votes
4
replies
6.1k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller
bioclite
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
Stephanie M. Gogarten
▴ 870
0
votes
4
replies
1.9k
views
package ‘hugene10stv1’ is not available: problem in fitProbeLevelModel
Annotation
cdf
BiocInstaller
Annotation
cdf
BiocInstaller
updated 11.7 years ago by
Benilton Carvalho
★ 4.3k • written 11.7 years ago by
suparna mitra
▴ 290
0
votes
4
replies
2.3k
views
Problems installing EBImage - Symbol not found: _gdk_display
GUI
convert
OLIN
EBImage
BiocInstaller
GUI
convert
OLIN
EBImage
BiocInstaller
11.7 years ago
Dan Tenenbaum
★ 8.2k
3
votes
3
replies
3.8k
views
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller
installation
TxDb
updated 9.3 years ago by
Marc Carlson
★ 7.2k • written 9.3 years ago by
Laurent Gatto
1.6k
0
votes
3
replies
2.2k
views
Rsubread installation failed.
Rsubread
BiocInstaller
updated 12.2 years ago by
Gordon Smyth
50k • written 12.2 years ago by
Sang Chul Choi
▴ 230
0
votes
3
replies
1.3k
views
useDevel() not working
BiocInstaller
BiocInstaller
updated 11.9 years ago by
Sean Davis
21k • written 11.9 years ago by
Michael Muratet
▴ 420
0
votes
3
replies
2.2k
views
bioc package installation problem
ShortRead
BiocInstaller
ShortRead
BiocInstaller
updated 11.1 years ago by
Dan Tenenbaum
★ 8.2k • written 11.1 years ago by
carol white
▴ 680
0
votes
3
replies
1.1k
views
Troubles with mzR and BiocInstaller
mzr rcpp
biocinstaller
5.4 years ago • updated 5.3 years ago
petr.hasler
• 0
1
vote
3
replies
1.4k
views
Trouble installing BiocInstaller
biocinstaller
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
2299639P
▴ 10
0
votes
3
replies
1.3k
views
biocLite() wants to update current packages
BiocInstaller
updated 5.0 years ago by
shepherl
3.8k • written 5.0 years ago by
lghunsicker
• 0
0
votes
3
replies
1.9k
views
Bioconductor installation problem (MacOSX El-Capitan)
biocinstaller
6.9 years ago
zhanxw
• 0
0
votes
3
replies
3.4k
views
Installation of XCMS / mzR failed
cdf
xcms
BiocInstaller
cdf
xcms
BiocInstaller
updated 11.8 years ago by
James W. MacDonald
65k • written 11.8 years ago by
Johannes Raffler
▴ 20
0
votes
3
replies
2.3k
views
BiocInstaller on R-devel
BiocInstaller
BiocInstaller
updated 11.1 years ago by
Martin Morgan
25k • written 11.1 years ago by
Kasper Daniel Hansen
★ 6.5k
1
vote
3
replies
1.3k
views
Bioconductor Software download
biocinstaller
bioconductor
download
7.0 years ago
s.munster
▴ 40
1
vote
3
replies
1.1k
views
Error by installing BiocManager
BiocInstaller
BiocManager
Bioconductor
3.3 years ago
adklts
• 0
0
votes
2
replies
2.3k
views
unable to install lumi package
lumi
BiocInstaller
lumi
BiocInstaller
updated 12.5 years ago by
James W. MacDonald
65k • written 12.5 years ago by
Juliet Hannah
▴ 360
0
votes
2
replies
2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure
Cancer
Biobase
tkWidgets
globaltest
BiocInstaller
BiocGenerics
Cancer
updated 11.1 years ago by
Martin Morgan
25k • written 11.1 years ago by
Shields, Rusty IMS
▴ 40
0
votes
2
replies
1.1k
views
can't downlaod package "beadarrayExampleData"
BiocInstaller
BiocInstaller
updated 12.4 years ago by
Dan Tenenbaum
★ 8.2k • written 12.4 years ago by
易士 路
▴ 10
3
votes
2
replies
3.2k
views
Cannot install GenomicFeatures package (related to RSQLite version)
biocinstaller
genomicfeatures
rsqlite
updated 9.4 years ago by
Dan Tenenbaum
★ 8.2k • written 9.4 years ago by
vimartin
• 0
2
votes
2
replies
4.5k
views
Help with installing biocLite.R
biocLite
biocinstaller
9.0 years ago
thomas.mohr
▴ 20
2
votes
2
replies
1.9k
views
BioC and genevisR and maftools
genevisr
maftools
bioconductor
biocinstaller
7.3 years ago
Bogdan
▴ 670
50 results • Page
1 of 1
Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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