Showing : FASTA • reset
0
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16
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4.4k
views
Error while using buildindex for human genome
rsubread buildindex fasta alignment
5.5 years ago writetoroopali • 0
8
votes
14
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11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa msaprettyprint() fasta
updated 6.9 years ago by • 0 • written 7.3 years ago by ▴ 50
6
votes
8
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2.8k
views
Ranges from a fasta file
biostrings fasta genomicranges granges
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 80
0
votes
5
replies
2.8k
views
DNAString: Standard checksum function?
Biostrings FASTA sequencing
8.2 years ago • updated 2 days ago Henrik Bengtsson ★ 2.4k
0
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5
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1.4k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges biostrings fasta protein readaastringset
updated 7.6 years ago by ★ 11k • written 7.6 years ago by ★ 1.5k
2
votes
4
replies
1.8k
views
customProDB: error aberrant fasta from indels
indel customprodb fasta variantannotation
updated 8.8 years ago by ▴ 50 • written 8.8 years ago by • 0
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
2.7 years ago HELEN • 0
2
votes
4
replies
1.3k
views
convert a sequence to Ranges object
iranges fasta split
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ★ 1.5k
3
votes
3
replies
1.4k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer fasta import Biostrings
updated 5.3 years ago by ★ 11k • written 5.3 years ago by ▴ 120
2
votes
3
replies
2.1k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart fasta
updated 6.7 years ago by 65k • written 6.7 years ago by • 0
4
votes
3
replies
3.7k
views
a package for read.fasta
seqinr fasta
updated 8.7 years ago by 16k • written 8.7 years ago by ▴ 40
1
vote
2
replies
3.1k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings fasta R Call2
updated 7.3 years ago by 25k • written 7.3 years ago by • 0
0
votes
2
replies
5.1k
views
Converting Fastq to Fasta in R
R Bioinformatics Fastq Fasta
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
0
votes
2
replies
897
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
written 3.9 years ago by • 0
1
vote
2
replies
2.1k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings fasta protein
updated 7.3 years ago by 65k • written 7.3 years ago by • 0
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast annotate biostrings export fasta
9.5 years ago b.stielow • 0
0
votes
1
reply
695
views
How to get similarity score between two genomes of different species
fasta multi-species
3.6 years ago drew.neely • 0
2
votes
1
reply
1.6k
views
export BSgenome directly in gzipped fasta
bsgenome gzip fasta
updated 8.1 years ago by ▴ 90 • written 8.1 years ago by ▴ 80
0
votes
1
reply
1.5k
views
vmatchpattern with indexed fasta files
fasta fai vmatchpattern biostrings
updated 8.3 years ago by 16k • written 8.5 years ago by • 0
0
votes
0
replies
641
views
Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
2.5 years ago HELEN • 0
2
votes
0
replies
3.3k
views
News: Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub Gencode GFF3 FASTA News
8.7 years ago Sonali Arora ▴ 390
0
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0
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1.0k
views
filter and trim large fasta/bam files
deep sequencing fasta bam trim
6.6 years ago achaillon • 0
0
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0
replies
1.5k
views
How to extract SNPs from multiple alignment fasta file?
snp multiple sequence alignment fasta Tutorial
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
0
votes
0
replies
878
views
Quantifying reporter expression to validate sequencing
alignment Fastq fasta
5.5 years ago A ▴ 40
0
votes
0
replies
703
views
Working with fasta files in sangerseqR
Fasta Ab1 Abif Scf
3.6 years ago dh.heredero ▴ 10
1
vote
0
replies
828
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS mutation variant fasta
2.7 years ago Endre Sebestyén ▴ 70
26 results • Page 1 of 1
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Replies
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k
Regardless of whether it agrees with `t.test` or not, the formula given in the original question is correct and is more accurate than the f…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by nbay13 • 0
A little late to the party, but I found that using the equation you specified, the p-values are actually slightly off from base R's `t.test…
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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