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Fasta
•
reset
0
votes
2
replies
1.2k
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 4.8 years ago by
joannew
• 0
0
votes
0
replies
823
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
3.3 years ago
HELEN
• 0
0
votes
4
replies
4.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
3.6 years ago • updated 3.5 years ago
HELEN
• 0
1
vote
0
replies
1.0k
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
3.6 years ago
Endre Sebestyén
▴ 70
0
votes
1
reply
899
views
How to get similarity score between two genomes of different species
fasta
multi-species
4.4 years ago
drew.neely
• 0
0
votes
0
replies
911
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
4.4 years ago
dh.heredero
▴ 10
6
votes
8
replies
3.5k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
Konstantinos Yeles
▴ 80
3
votes
3
replies
1.7k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 6.1 years ago by
Michael Lawrence
★ 11k • written 6.1 years ago by
k.vitting.seerup
▴ 120
0
votes
2
replies
6.1k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 6.1 years ago by
James W. MacDonald
68k • written 6.1 years ago by
christinafragel
• 0
0
votes
0
replies
1.1k
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
6.3 years ago
A
▴ 40
0
votes
16
replies
5.0k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
6.4 years ago
writetoroopali
• 0
0
votes
0
replies
1.7k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.3k
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
7.4 years ago
achaillon
• 0
2
votes
3
replies
2.5k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
Glubbdrubb
• 0
8
votes
14
replies
12k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 7.8 years ago by
tongtong.wang1210
• 0 • written 8.1 years ago by
Olorin
▴ 50
2
votes
4
replies
1.6k
views
convert a sequence to Ranges object
iranges
fasta
split
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
3.5k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
kevin.debray
• 0
1
vote
2
replies
2.7k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 8.1 years ago by
James W. MacDonald
68k • written 8.1 years ago by
fastabest
• 0
0
votes
5
replies
1.7k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.8k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 8.9 years ago by
Jeff Johnston
▴ 90 • written 8.9 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
3.4k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
9.0 years ago • updated 10 months ago
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
1.7k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 9.2 years ago by
Hervé Pagès
16k • written 9.3 years ago by
giuliobarth
• 0
4
votes
3
replies
4.2k
views
a package for read.fasta
seqinr
fasta
updated 9.5 years ago by
Hervé Pagès
16k • written 9.5 years ago by
Angel
▴ 40
2
votes
0
replies
3.9k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
9.5 years ago
Sonali Arora
▴ 390
2
votes
4
replies
2.2k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 9.7 years ago by
xiaojing.wang
▴ 50 • written 9.7 years ago by
kristenbeck527
• 0
2
votes
2
replies
2.1k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
10.3 years ago
b.stielow
• 0
26 results • Page
1 of 1
Recent ...
Replies
Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
AB
▴ 110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac
by
DENG
• 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table
by
shepherl
4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
shepherl
4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file
by
shocked.tick.zyet
• 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Votes
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
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AB
▴ 110
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Lluís Revilla Sancho
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