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Fasta
•
reset
0
votes
2
replies
1.2k
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 4.8 years ago by
joannew
• 0
0
votes
0
replies
821
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
3.3 years ago
HELEN
• 0
0
votes
4
replies
4.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
3.5 years ago
HELEN
• 0
1
vote
0
replies
1.0k
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
3.6 years ago
Endre Sebestyén
▴ 70
0
votes
1
reply
896
views
How to get similarity score between two genomes of different species
fasta
multi-species
4.4 years ago
drew.neely
• 0
0
votes
0
replies
910
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
4.4 years ago
dh.heredero
▴ 10
6
votes
8
replies
3.5k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
Konstantinos Yeles
▴ 80
3
votes
3
replies
1.7k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 6.1 years ago by
Michael Lawrence
★ 11k • written 6.1 years ago by
k.vitting.seerup
▴ 120
0
votes
2
replies
6.1k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 6.1 years ago by
James W. MacDonald
68k • written 6.1 years ago by
christinafragel
• 0
0
votes
0
replies
1.1k
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
6.3 years ago
A
▴ 40
0
votes
16
replies
5.0k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
6.4 years ago
writetoroopali
• 0
0
votes
0
replies
1.7k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.3k
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
7.4 years ago
achaillon
• 0
2
votes
3
replies
2.5k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
Glubbdrubb
• 0
8
votes
14
replies
12k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 7.8 years ago by
tongtong.wang1210
• 0 • written 8.1 years ago by
Olorin
▴ 50
2
votes
4
replies
1.6k
views
convert a sequence to Ranges object
iranges
fasta
split
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
3.5k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
kevin.debray
• 0
1
vote
2
replies
2.7k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 8.1 years ago by
James W. MacDonald
68k • written 8.1 years ago by
fastabest
• 0
0
votes
5
replies
1.7k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.8k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 8.9 years ago by
Jeff Johnston
▴ 90 • written 8.9 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
3.4k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
9.0 years ago • updated 10 months ago
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
1.7k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 9.2 years ago by
Hervé Pagès
16k • written 9.3 years ago by
giuliobarth
• 0
4
votes
3
replies
4.2k
views
a package for read.fasta
seqinr
fasta
updated 9.5 years ago by
Hervé Pagès
16k • written 9.5 years ago by
Angel
▴ 40
2
votes
0
replies
3.9k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
9.5 years ago
Sonali Arora
▴ 390
2
votes
4
replies
2.2k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 9.7 years ago by
xiaojing.wang
▴ 50 • written 9.7 years ago by
kristenbeck527
• 0
2
votes
2
replies
2.1k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
10.3 years ago
b.stielow
• 0
26 results • Page
1 of 1
Recent ...
Replies
Answer: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
by
James W. MacDonald
68k
As an example ``` > library(GEOquery) > library(oligo) > library(limma) > library(affycoretools) ## you need this package to annota…
Comment: EuroBioC2023 abstract submission is open!
by
ht
• 0
Great news about EuroBioC2023 abstract submissions! This is an excellent opportunity to share cutting-edge research. Speaking of cutting-ed…
Comment: orgDB
by
shepherl
4.1k
You should look at the documentation on the help pages for those packages. It should be clear enough there. But to speed things along: `…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
by
Harry
• 0
It's interesting to see how the normalization factors are all 1, yet the MA plot reflects changes, indicating that the normalization proces…
Comment: European Bioconductor Conference 2023 planning
by
Andrew
• 0
Great information! This is a great opportunity for the computational biology community to connect and grow. @[Chill Guy Clicker][1] [1…
Votes
Calculating TOM in blockwise WGCNA
A: What is the "linear model" part used for in Limma?
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
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