Showing : GO.db • reset
4
votes
2
replies
3.8k
views
Cannot load or update GO.db
GO.db bioclite
9.0 years ago Steve Pederson ▴ 170
4
votes
2
replies
1.8k
views
mapIds to get GO terms
annotationdbi go.db
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 10
3
votes
3
replies
1.1k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 5.6 years ago by • 0 • written 5.6 years ago by ▴ 10
3
votes
8
replies
2.5k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 10
3
votes
2
replies
1.9k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 3.2 years ago by 25k • written 3.2 years ago by ★ 3.9k
2
votes
6
replies
4.2k
views
DiffBind installation doesn't work
diffbind go.db
8.9 years ago • updated 8.8 years ago Gary ▴ 20
2
votes
2
replies
1.4k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
2
votes
1
reply
920
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 3.1 years ago by ▴ 780 • written 3.1 years ago by • 0
2
votes
2
replies
994
views
retrieve gene IDs from GO.db GO
GO GO.db
3.0 years ago decppced • 0
2
votes
5
replies
160
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 1 day ago by 65k • written 3 days ago by • 0
2
votes
17
replies
1.0k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 3 months ago by ▴ 730 • written 3 months ago by ▴ 50
2
votes
5
replies
958
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 4.9 years ago by 65k • written 4.9 years ago by • 0
2
votes
2
replies
958
views
Troubles installing GO.db
go.db
updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 20
1
vote
0
replies
360
views
Typo in GO.db manual reference
GO.db
12 months ago RuBBiT0 ▴ 10
1
vote
2
replies
2.6k
views
Installation Error- GO.db
GO.db
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 10
1
vote
1
reply
1.7k
views
How to install old version of GO.db in R
GO.db R
updated 7.8 years ago by 25k • written 7.8 years ago by • 0
1
vote
5
replies
5.4k
views
can not able to install go.db
go.db
updated 7.4 years ago by 25k • written 7.4 years ago by • 0
1
vote
10
replies
2.7k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.0 years ago by 65k • written 7.0 years ago by • 0
1
vote
1
reply
1.1k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
1
vote
2
replies
1.4k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 5.4 years ago by 25k • written 5.4 years ago by ★ 1.0k
1
vote
4
replies
1.1k
views
Trouble installing package GO.db
GO.db
updated 4.3 years ago by 65k • written 4.3 years ago by • 0
1
vote
2
replies
713
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
1
vote
2
replies
1.3k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
1
vote
1
reply
1.3k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 3.4 years ago by 65k • written 3.4 years ago by • 0
1
vote
2
replies
895
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3.1 years ago MOHAMMAD • 0
1
vote
6
replies
1.8k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 2.6 years ago by • 0 • written 2.7 years ago by ▴ 40
1
vote
1
reply
1.9k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
23 months ago Lucía ▴ 10
1
vote
2
replies
881
views
GO.db for Bioconductor 3.17
GO.db devel
14 months ago Amanda D. Clark • 0
1
vote
6
replies
1.1k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 2.3 years ago by 65k • written 2.3 years ago by • 0
0
votes
5
replies
1.5k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 5.1 years ago by 65k • written 5.1 years ago by • 0
0
votes
3
replies
1.5k
views
GO.db installation error
GO go.db
7.5 years ago cananhas • 0
0
votes
5
replies
4.1k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
0
votes
1
reply
1.1k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
0
votes
2
replies
1.5k
views
Can't install GO.db
GOexpress GO.db GOSemSim
17 months ago Chruut • 0
0
votes
2
replies
1.3k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 3.8 years ago by 65k • written 3.8 years ago by ★ 2.0k
0
votes
4
replies
1.4k
views
Error attaching TIN
software error GO.db TIN
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
0
votes
0
replies
385
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
10 months ago RuBBiT0 ▴ 10
0
votes
1
reply
1.7k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
3.9 years ago Jenny Drnevich ★ 2.0k
0
votes
4
replies
1.1k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
0
votes
8
replies
694
views
GOslim missing GO term
GO.db GOslim
4 months ago amanda • 0
0
votes
0
replies
2.3k
views
Trouble with GO.db - installation of package GO.db had non-zero exit status
software error GO.db
8.0 years ago christin.berlin • 0
0
votes
1
reply
677
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 18 months ago by ▴ 780 • written 19 months ago by • 0
0
votes
4
replies
1.3k
views
GO.db package can't be installed
install GO.db
updated 3.3 years ago by 25k • written 3.3 years ago by • 0
0
votes
1
reply
1.2k
views
Gene Ontolology and Annotation
Gene Ontolology Annotation GO.db org.Sc.sgd.db org.Hs.eg.db
updated 8.3 years ago by ▴ 760 • written 8.3 years ago by • 0
0
votes
1
reply
1.3k
views
GO.db/GOSim bugged or my bad?
go.db software error bug
updated 9.0 years ago by 16k • written 9.0 years ago by ▴ 10
0
votes
1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
0
votes
1
reply
1.7k
views
Error attaching GO.db package
GO.db loadnamespace annotation chippeakanno
updated 9.1 years ago by ★ 8.2k • written 9.1 years ago by ▴ 10
0
votes
1
reply
375
views
Which species does GO.db use
GO.db annotationTools
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
0
votes
1
reply
908
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
0
votes
1
reply
1.5k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
50 results • Page 1 of 1
Recent ...
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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