Showing : biocmanager • reset
12
votes
33
replies
28k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.1 years ago by 65k • written 3.0 years ago by ▴ 60
9
votes
32
replies
6.1k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.0 years ago by 16k • written 5.0 years ago by • 0
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 90
6
votes
6
replies
6.8k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 2.7 years ago by • 0 • written 3.0 years ago by 6.7k
5
votes
6
replies
2.5k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 3.5 years ago by 25k • written 3.5 years ago by ▴ 90
5
votes
2
replies
876
views
can't install DESeq2 ("unable to access index for repository")
biocmanager DESeq2
8 months ago Alessia ▴ 40
4
votes
13
replies
3.7k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 16 months ago by ★ 5.2k • written 22 months ago by • 0
4
votes
9
replies
2.4k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 10
3
votes
5
replies
1.2k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.1 years ago dakarai_esgdaille ▴ 10
3
votes
4
replies
2.0k
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 5.4 years ago by 3.9k • written 5.4 years ago by • 0
2
votes
4
replies
2.1k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 17 months ago by • 0
2
votes
1
reply
4.0k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 23 months ago by 690 • written 23 months ago by ▴ 10
2
votes
3
replies
1.9k
views
Unable to install BiocManager
BiocManager
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 10
1
vote
2
replies
2.2k
views
I can't install the pasilla package
pasilla biocmanager
updated 5.5 years ago by 65k • written 5.5 years ago by ▴ 20
1
vote
5
replies
3.0k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
1
vote
1
reply
1.0k
views
GenomicFeatures won't install for 3.8 release
installation biocmanager
updated 5.5 years ago by 3.9k • written 5.5 years ago by ▴ 90
1
vote
6
replies
11k
views
Cannot install Bioconductor Packages. Cannot install BiocManager.
software error bioconductor biocmanager
updated 5.5 years ago by 3.9k • written 5.5 years ago by ▴ 10
1
vote
6
replies
2.5k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran biocinstaller biocmanager
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 130
1
vote
3
replies
1.3k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 4.5 years ago by 25k • written 4.5 years ago by ★ 2.4k
1
vote
21
replies
5.1k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 4.0 years ago by ▴ 60
1
vote
3
replies
4.3k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
1
vote
6
replies
3.0k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 10
1
vote
3
replies
1.1k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
3.3 years ago adklts • 0
1
vote
6
replies
1.7k
views
Problems installing BiocManager
BiocManager
2.1 years ago ksci ▴ 20
1
vote
3
replies
5.4k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 16 months ago by 3.9k • written 17 months ago by • 0
1
vote
2
replies
1.2k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 2.9 years ago by 65k • written 2.9 years ago by • 0
1
vote
5
replies
1.4k
views
EBImage installation problem
BiocManager
updated 24 months ago by 6.7k • written 24 months ago by • 0
0
votes
1
reply
842
views
BiocManager::install() update change from biocLite()
BiocManager
4.6 years ago howarth.mailing.lists ▴ 10
0
votes
4
replies
1.5k
views
BiocManager::install() breaks; can't install bioc-devel
biocmanager installation
5.7 years ago Kyle Johnsen ▴ 30
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.3 years ago by 65k • written 3.3 years ago by ▴ 10
0
votes
2
replies
895
views
I cannot install the splatter on colab
splatter biocmanager
written 3.2 years ago by • 0
0
votes
2
replies
2.1k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
0
votes
3
replies
1.2k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 18 months ago by 6.7k • written 18 months ago by • 0
0
votes
13
replies
2.6k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 20
0
votes
4
replies
1.4k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by • 0
0
votes
2
replies
1.3k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
2.3 years ago f1014063507 • 0
0
votes
0
replies
288
views
News: CRAN downtime
BiocManager Bioconductor
5 months ago shepherl 3.9k
0
votes
2
replies
2.8k
views
Problem installing scater
scater R biocmanager bioconductor
updated 5.4 years ago by ★ 28k • written 5.4 years ago by • 0
0
votes
5
replies
1.7k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
4.5 years ago wang.lingjue • 0
0
votes
1
reply
2.9k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 18 months ago by 3.9k • written 19 months ago by • 0
0
votes
4
replies
901
views
Unable to install BiocManager
Biocmanager R
updated 13 months ago by ▴ 50 • written 13 months ago by • 0
0
votes
3
replies
4.5k
views
Rhdf5lib install problems
R bioconductor rhdf5 biocmanager 3.5
5.5 years ago cem45 • 0
0
votes
2
replies
3.3k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 16 months ago by 65k • written 16 months ago by • 0
0
votes
1
reply
655
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 21 months ago by ▴ 780 • written 21 months ago by • 0
0
votes
4
replies
827
views
Error installing Bioc
clusterProfiler Bioconductor BiocManager
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
0
votes
2
replies
751
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 17 months ago by • 0
0
votes
3
replies
3.6k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
2.0 years ago Olivia • 0
0
votes
3
replies
952
views
Installation path not writable
ebimage biocmanager
updated 4.2 years ago by 65k • written 4.2 years ago by • 0
0
votes
1
reply
1.6k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 4.2 years ago by 3.9k • written 4.2 years ago by • 0
50 results • Page 1 of 1
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Replies
Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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