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fasta
•
reset
0
votes
2
replies
882
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 3.9 years ago by
joannew
• 0
0
votes
0
replies
632
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
2.5 years ago
HELEN
• 0
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.7 years ago
HELEN
• 0
1
vote
0
replies
817
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
2.7 years ago
Endre Sebestyén
▴ 70
0
votes
1
reply
684
views
How to get similarity score between two genomes of different species
fasta
multi-species
3.6 years ago
drew.neely
• 0
0
votes
0
replies
690
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
3.6 years ago
dh.heredero
▴ 10
6
votes
8
replies
2.7k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
Konstantinos Yeles
▴ 80
3
votes
3
replies
1.3k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 5.2 years ago by
Michael Lawrence
★ 11k • written 5.2 years ago by
k.vitting.seerup
▴ 120
0
votes
2
replies
5.1k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
christinafragel
• 0
0
votes
0
replies
872
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
5.5 years ago
A
▴ 40
0
votes
16
replies
4.3k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
5.5 years ago
writetoroopali
• 0
0
votes
0
replies
1.4k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.0k
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
6.5 years ago
achaillon
• 0
2
votes
3
replies
2.1k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
Glubbdrubb
• 0
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 6.9 years ago by
tongtong.wang1210
• 0 • written 7.3 years ago by
Olorin
▴ 50
2
votes
4
replies
1.3k
views
convert a sequence to Ranges object
iranges
fasta
split
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.2 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
3.0k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
kevin.debray
• 0
1
vote
2
replies
2.1k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
fastabest
• 0
0
votes
5
replies
1.4k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.6k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 8.0 years ago by
Jeff Johnston
▴ 90 • written 8.0 years ago by
TimothéeFlutre
▴ 80
0
votes
4
replies
2.8k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.1 years ago
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
1.5k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 8.3 years ago by
Hervé Pagès
16k • written 8.5 years ago by
giuliobarth
• 0
4
votes
3
replies
3.7k
views
a package for read.fasta
seqinr
fasta
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
Angel
▴ 40
2
votes
0
replies
3.3k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
8.7 years ago
Sonali Arora
▴ 390
2
votes
4
replies
1.8k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.8 years ago by
xiaojing.wang
▴ 50 • written 8.8 years ago by
kristenbeck527
• 0
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
9.5 years ago
b.stielow
• 0
26 results • Page
1 of 1
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Replies
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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