Showing : flow cytometry • reset
0
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874
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namespace conflict flowAI and ggCyto
software error flow cytometry ggcyto flowAI
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 70
5
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4
replies
1.5k
views
ggcyto wrong axis scale?
ggcyto flowWorkspace flow cytometry flowjo
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 10
3
votes
10
replies
2.3k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 23 months ago by ▴ 350 • written 4.0 years ago by ▴ 30
2
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4
replies
1.1k
views
Mathematical operations in FCS file
flowCore flow cytometry
4.4 years ago chandra.swarnendu • 0
0
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7
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1.8k
views
Issue with flowAI and flow_auto_qc
flowAI flow_auto_qc QC flow cytometry
updated 4.5 years ago by • 0 • written 4.5 years ago by • 0
4
votes
4
replies
1.3k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 4.9 years ago by ▴ 310 • written 4.9 years ago by ▴ 80
1
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3
replies
1.2k
views
Cannot inverse transform GatingSet
flowworkspace flow cytometry flow workspace
updated 5.0 years ago by ▴ 310 • written 5.0 years ago by • 0
0
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0
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734
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
5.1 years ago kovacik • 0
1
vote
5
replies
1.7k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
5.1 years ago carlos.x.martinez-fleites • 0
2
votes
5
replies
1.3k
views
flowCore filterSummary toTable() function not working
flowCore flowcore flow cytometry
updated 5.2 years ago by ▴ 310 • written 5.2 years ago by • 0
3
votes
3
replies
1.1k
views
ncdfFlowSet with dim=3
ncdfflow flow cytometry
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by ▴ 30
0
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2
replies
1.1k
views
flowCore: retain raw data in the flowset after transformation
flow cytometry flowcore
updated 5.3 years ago by ★ 1.3k • written 5.3 years ago by • 0
3
votes
3
replies
3.3k
views
Modifying or writing a FCS file in R using the FlowCore package
FCS flowframe flowcore flow cytometry
5.6 years ago vonskopnik ▴ 10
0
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1
reply
1.1k
views
How do I apply a singleParameterTransform to a number of parameters in a flowFrame like the standard transforms?
flowcore flow cytometry flowdensity hyperlog transformation
updated 5.7 years ago by ★ 1.3k • written 5.7 years ago by • 0
1
vote
3
replies
4.7k
views
Load FlowCore to read .fcs files in R
flowcore flow cytometry R
5.8 years ago Bayram Sarilmaz • 0
2
votes
5
replies
1.8k
views
How to identify multiple datasets in FCS file through flowCore
flowcore flow cytometry dataset
5.9 years ago vinko.tosevski • 0
0
votes
3
replies
1.6k
views
Spillover matrix in FlowCore doesn't match Compensation Matrix from FlowJo
spillover flowcore compensation matrix bioconductor flow cytometry
6.2 years ago Samuel Ahuno • 0
2
votes
4
replies
2.8k
views
Exporting FCS from FlowJo for flowCore & cytofkit analysis
flowcore flow cytometry cytofkit
updated 6.2 years ago by ▴ 350 • written 6.2 years ago by ▴ 10
1
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2
replies
1.3k
views
How do you re-order .fcs files in a flowSet?
flowcore flowset bioconductor flow cytometry fcs file
6.2 years ago Samuel Ahuno • 0
0
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0
replies
649
views
Extracting matched cluster IDs in flowMatch
flowMatch flow cytometry
6.2 years ago vinko.tosevski • 0
0
votes
1
reply
976
views
spillover::flowCore problem: Error: Unable to match stains with controls based on intensity: a single stain matches to several multiple controls.
flowCore spillover compensation matrix bioconductor flow cytometry
6.2 years ago Samuel Ahuno • 0
1
vote
2
replies
1.4k
views
flowCore estimate logicle - error in getChannelMarker
flowcore flow cytometry transformation
updated 6.4 years ago by ▴ 350 • written 6.4 years ago by ▴ 10
3
votes
3
replies
1.7k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 5.6 years ago by ★ 1.3k • written 6.5 years ago by ▴ 10
1
vote
3
replies
1.3k
views
Please help me verify my compensation and spill matrices makes sense ( openCyto package, in flowCore )
flow cytometry flowcore spillover compensation matrix
updated 6.5 years ago by ▴ 350 • written 6.5 years ago by ▴ 20
1
vote
1
reply
1.0k
views
Using inverse logicle in flowCore
flowCore logicle transformation flow cytometry
updated 6.6 years ago by ★ 1.3k • written 6.6 years ago by ▴ 10
0
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1
reply
1.1k
views
can a function outliers be applied for a flowframe?
bioconductor flow cytometry rstudio
updated 6.9 years ago by ▴ 350 • written 6.9 years ago by • 0
7
votes
11
replies
16k
views
Error: package or namespace load failed for...
package installation flowviz flowcore rcpp flow cytometry
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 50
1
vote
1
reply
2.0k
views
Loading FCS files
FCS flow cytometry bioconductor phenoData Loading Data
updated 7.3 years ago by ▴ 350 • written 7.3 years ago by • 0
0
votes
1
reply
1.1k
views
Transform data from MoFlo Astrios
transform flow cytometry data
updated 7.3 years ago by ▴ 350 • written 7.3 years ago by • 0
0
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0
replies
1.2k
views
Flow cytometry compensation in R
flow cytometry compensation R
7.4 years ago akisheev89 • 0
1
vote
7
replies
1.7k
views
segmentation faults flowMeans and flowStats
flowstats flow cytometry
7.5 years ago frederiekmaarten.kerckhof ▴ 10
0
votes
6
replies
1.6k
views
Error biexponential transform flowTrans
flowtrans flow cytometry flowcore
updated 7.5 years ago by ★ 1.3k • written 7.5 years ago by • 0
0
votes
4
replies
1.7k
views
flowCore question regarding to the data range
flowcore flow cytometry
updated 7.7 years ago by • 0 • written 7.7 years ago by ★ 1.3k
0
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1
reply
1.2k
views
using flowIncubator package's function
opencyto flow cytometry R package installation
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by • 0
1
vote
3
replies
1.9k
views
flowViz and grid
flowcore flowviz flow cytometry
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by ▴ 70
0
votes
1
reply
1.4k
views
How to manually set base landmark in flowStats gaussNorm
flow cytometry flowstats gaussnorm issues
7.9 years ago Jiang, Mike ★ 1.3k
1
vote
1
reply
1.1k
views
OpenCyto -- time gate and border events
opencyto gating flowcore flow cytometry
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by ▴ 30
1
vote
6
replies
3.0k
views
Errors in creating a flowSet from fcs files
flowcore flowstats flow cytometry read.flowset()
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
0
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0
replies
1.7k
views
Creating a flowSet
flowcore flow cytometry flowstats read.flowset()
8.0 years ago mbxtp1 • 0
1
vote
5
replies
1.8k
views
openCyto - flowclust.2d throws errors
opencyto flow cytometry
updated 8.0 years ago by • 0 • written 8.0 years ago by ▴ 30
2
votes
2
replies
1.8k
views
How to FlowCore
flowcore flow cytometry
updated 8.4 years ago by ★ 1.3k • written 8.4 years ago by • 0
1
vote
1
reply
1.5k
views
Understanding Flow cytometry data
flow cytometry flowcore flowclean rflowcyt flowworkspace
updated 8.4 years ago by ★ 1.3k • written 8.4 years ago by • 0
0
votes
1
reply
900
views
How to analyse flowdata staring with the fcs files till the end?
flow cytometry
updated 8.4 years ago by 16k • written 8.4 years ago by • 0
0
votes
0
replies
1.5k
views
flowWorkspace and ggcyto
flowworkspace flow cytometry visualization
8.7 years ago Jiang, Mike ★ 1.3k
1
vote
0
replies
1.2k
views
writing out FCS files then reading them back in
flowcore flow cytometry
8.8 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.0k
views
xyplot of flowViz
flowviz flow cytometry
8.8 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.5k
views
On boolean combinations (flowWorkspace)
flowworkspace flow cytometry
8.9 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
965
views
readFCS truncates the data that is out of instrument range
flowcore flow cytometry
8.9 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.4k
views
openCyto transitional gate
flow cytometry opencyto
9.1 years ago Jiang, Mike ★ 1.3k
3
votes
2
replies
1.7k
views
How are autofluorescence values used in the spillover/compensate functions?
flowcore flow cytometry compensation spillover
updated 9.1 years ago by ▴ 150 • written 9.1 years ago by ▴ 20
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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