Showing : go.db • reset
4
votes
2
replies
4.1k
views
Cannot load or update GO.db
GO.db bioclite
9.9 years ago Steve Pederson ▴ 170
4
votes
2
replies
2.4k
views
mapIds to get GO terms
annotationdbi go.db
updated 9.3 years ago by 25k • written 9.3 years ago by ▴ 10
3
votes
2
replies
2.7k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 4.1 years ago by 25k • written 4.1 years ago by ★ 4.1k
3
votes
3
replies
1.3k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 6.5 years ago by • 0 • written 6.5 years ago by ▴ 10
3
votes
1
reply
1.4k
views
Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 8 months ago by ★ 4.1k • written 8 months ago by ▴ 10
3
votes
2
replies
1.0k
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.9 years ago by 68k • written 4.9 years ago by ▴ 10
3
votes
8
replies
2.9k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 10
2
votes
17
replies
3.1k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 14 months ago by ▴ 760 • written 14 months ago by ▴ 50
2
votes
6
replies
4.8k
views
DiffBind installation doesn't work
diffbind go.db
9.8 years ago • updated 9.7 years ago Gary ▴ 20
2
votes
2
replies
1.2k
views
Troubles installing GO.db
go.db
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 20
2
votes
2
replies
1.7k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
2
votes
5
replies
1.3k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
2
votes
2
replies
1.3k
views
retrieve gene IDs from GO.db GO
GO GO.db
3.9 years ago decppced • 0
2
votes
1
reply
1.1k
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 4.0 years ago by ▴ 780 • written 4.0 years ago by • 0
2
votes
1
reply
3.3k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
2.8 years ago Lucía ▴ 30
2
votes
5
replies
725
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 10 months ago by 68k • written 11 months ago by • 0
1
vote
6
replies
1.6k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
1
vote
6
replies
2.7k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 3.5 years ago by • 0 • written 3.6 years ago by ▴ 40
1
vote
1
reply
1.4k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
1
vote
1
reply
1.8k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 4.3 years ago by 68k • written 4.3 years ago by • 0
1
vote
2
replies
1.4k
views
GO.db for Bioconductor 3.17
GO.db devel
2.1 years ago Amanda D. Clark • 0
1
vote
4
replies
1.4k
views
Trouble installing package GO.db
GO.db
updated 5.2 years ago by 68k • written 5.2 years ago by ▴ 10
1
vote
2
replies
1.8k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 6.3 years ago by 25k • written 6.3 years ago by ★ 1.1k
1
vote
2
replies
2.8k
views
Installation Error- GO.db
GO.db
updated 8.7 years ago by 68k • written 8.7 years ago by ▴ 10
1
vote
1
reply
1.9k
views
How to install old version of GO.db in R
GO.db R
updated 8.7 years ago by 25k • written 8.7 years ago by • 0
1
vote
10
replies
3.2k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
1
vote
0
replies
598
views
Typo in GO.db manual reference
GO.db
23 months ago RuBBiT0 ▴ 10
1
vote
5
replies
5.9k
views
can not able to install go.db
go.db
updated 8.3 years ago by 25k • written 8.3 years ago by • 0
1
vote
2
replies
1.1k
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
4.0 years ago MOHAMMAD • 0
1
vote
2
replies
2.0k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
0
votes
1
reply
2.3k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.8 years ago Jenny Drnevich ★ 2.0k
0
votes
4
replies
1.4k
views
topGO "argument is of length zero" error
GO.db topGO
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
0
votes
1
reply
710
views
Which species does GO.db use
GO.db annotationTools
updated 20 months ago by ▴ 760 • written 20 months ago by • 0
0
votes
1
reply
938
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
0
votes
4
replies
1.7k
views
GO.db package can't be installed
install GO.db
updated 4.2 years ago by 25k • written 4.2 years ago by • 0
0
votes
1
reply
1.9k
views
Error attaching GO.db package
GO.db loadnamespace annotation chippeakanno
updated 10.0 years ago by ★ 8.2k • written 10.0 years ago by ▴ 10
0
votes
1
reply
2.2k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
votes
2
replies
1.7k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 4.7 years ago by 68k • written 4.7 years ago by ★ 2.0k
0
votes
1
reply
1.2k
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
votes
1
reply
1.3k
views
ViSEAGO
gene_ontology GOID ViSEAGO GO.db custom2GO
3.7 years ago jabbar_campbell • 0
0
votes
1
reply
3.1k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
3.4 years ago Yang • 0
0
votes
2
replies
2.7k
views
Can't install GO.db
GOexpress GO.db GOSemSim
2.3 years ago Chruut • 0
0
votes
0
replies
656
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
21 months ago RuBBiT0 ▴ 10
0
votes
3
replies
1.8k
views
GO.db installation error
GO go.db
8.4 years ago cananhas • 0
0
votes
1
reply
1.2k
views
I cannot install the package GO.db
GO.db
8.3 years ago chisad • 0
0
votes
1
reply
2.0k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 10
0
votes
3
replies
4.8k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
8.1 years ago Sidi.Ma • 0
0
votes
2
replies
1.7k
views
GO.db will not download
GO.db
8.1 years ago MOD • 0
0
votes
1
reply
1.9k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
votes
1
reply
2.7k
views
GO.db failure to install
software error go.db
7.1 years ago matt.a.bennett25890 • 0
50 results • Page 1 of 1
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Comment: DESEQ2 looking at main effects while controlling for a continuous variable by James W. MacDonald 68k
The covariate is accounted for when you fit the model, so you don't need to do anything with it at the contrast step. You don't need a con…
Comment: DESEQ2 looking at main effects while controlling for a continuous variable by Lennie • 0
Thank you so much for taking the time and for the detailed explanation! I was wondering, in your numeric contrast of c(1, -1, 0,0,0), doe…
Answer: DESEQ2 looking at main effects while controlling for a continuous variable by James W. MacDonald 68k
If you use a factor effects model (with an intercept), then you will have a baseline group (the intercept), and all other coefficients exce…
Comment: Issue with DECIPHER::IdTaxa by Daniel • 0
The issue is still there and it is a real pain. ape and ade4 are used by packages like Phyloseq. There should be a way to avoid these inc…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k
I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…
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Answer: DESEQ2 looking at main effects while controlling for a continuous variable
Use of clusterProfiler : Error in testForValidKeytype(x, keytype)
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
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