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go.db
•
reset
4
votes
2
replies
3.8k
views
Cannot load or update GO.db
GO.db
bioclite
9.0 years ago
Steve Pederson
▴ 170
4
votes
2
replies
1.9k
views
mapIds to get GO terms
annotationdbi
go.db
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
sisterdot
▴ 10
3
votes
3
replies
1.1k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO
ontology
GO.db
updated 5.6 years ago by
apkmirrorproject
• 0 • written 5.6 years ago by
marcinjoachimiak
▴ 10
3
votes
8
replies
2.5k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
karl.stamm
▴ 10
3
votes
2
replies
1.9k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db
AnnotationDbi
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
Guido Hooiveld
★ 3.9k
2
votes
6
replies
4.2k
views
DiffBind installation doesn't work
diffbind
go.db
8.9 years ago • updated 8.8 years ago
Gary
▴ 20
2
votes
2
replies
1.4k
views
GO.db source obo file?
gene ontology
gostats
go.db
ontologies
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
brismiller
• 0
2
votes
1
reply
922
views
Geno Ontology Analysis using gene symbol
GO.db
Annotation
Clusterprofile
GeneOntology
updated 3.2 years ago by
Basti
▴ 780 • written 3.2 years ago by
MOHAMMAD
• 0
2
votes
2
replies
1.0k
views
retrieve gene IDs from GO.db GO
GO
GO.db
3.0 years ago
decppced
• 0
2
votes
5
replies
214
views
How to retrieve gene ontology GO class from gene list?
GO.db
goTools
updated 7 days ago by
James W. MacDonald
65k • written 9 days ago by
bandconductor
• 0
2
votes
17
replies
1.0k
views
Problem installing package, version of dependency issue
AnnotationDbi
GO.db
updated 3 months ago by
Lluís Revilla Sancho
▴ 730 • written 3 months ago by
alexandre.blais
▴ 50
2
votes
5
replies
965
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db
annota
org.Hs.eg.
GO.db
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
brunogiotti
• 0
2
votes
2
replies
965
views
Troubles installing GO.db
go.db
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
Aurora
▴ 20
1
vote
0
replies
367
views
Typo in GO.db manual reference
GO.db
12 months ago
RuBBiT0
▴ 10
1
vote
2
replies
2.6k
views
Installation Error- GO.db
GO.db
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
cpotter710
▴ 10
1
vote
1
reply
1.7k
views
How to install old version of GO.db in R
GO.db
R
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
animesh_10kuet
• 0
1
vote
5
replies
5.4k
views
can not able to install go.db
go.db
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
jarraya.amina.fst
• 0
1
vote
10
replies
2.7k
views
Error installing Annaffy
affy
annaffy
go.db
kegg.db
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
Angela
• 0
1
vote
1
reply
1.1k
views
GO.db: searching for "top" GO term for list of terms
GO
go.db
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
TB18
• 0
1
vote
2
replies
1.4k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db
clusterprofiler
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
Leonardo Collado Torres
★ 1.0k
1
vote
4
replies
1.1k
views
Trouble installing package GO.db
GO.db
updated 4.3 years ago by
James W. MacDonald
65k • written 4.3 years ago by
C A
• 0
1
vote
2
replies
719
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
max.neal
• 0
1
vote
2
replies
1.3k
views
Help installing clusterProfiler
clusterProfiler
DO.db
GO.db
lazy load fail
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
masaver
• 0
1
vote
1
reply
1.3k
views
installing GO.bd for WGCNA
GO.db
WGCNA
updated 3.4 years ago by
James W. MacDonald
65k • written 3.4 years ago by
VictoriaL
• 0
1
vote
2
replies
897
views
Getting list of genes enriched in each of Biological process terms
GOstats
Go.db
GeneOntology
3.1 years ago
MOHAMMAD
• 0
1
vote
6
replies
1.8k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db
AnnotationDbi
updated 2.7 years ago by
Jacky
• 0 • written 2.7 years ago by
Guandong Shang
▴ 40
1
vote
1
reply
1.9k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler
GO.db
23 months ago
Lucía
▴ 10
1
vote
2
replies
894
views
GO.db for Bioconductor 3.17
GO.db
devel
14 months ago
Amanda D. Clark
• 0
1
vote
6
replies
1.2k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db
versioning
updated 2.3 years ago by
James W. MacDonald
65k • written 2.3 years ago by
rebeliscu
• 0
0
votes
5
replies
1.5k
views
hyperGTest not working on custom annotation package
GOstats
AnnotationDbi
GO.db
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
lucas.michel
• 0
0
votes
3
replies
1.5k
views
GO.db installation error
GO
go.db
7.6 years ago
cananhas
• 0
0
votes
5
replies
4.1k
views
Cannot install GO.db for R 3.6.1
GO.db
R 3.6.1
source package
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
Quinten
• 0
0
votes
1
reply
1.1k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db
hgu95av2.db
R3.6.0
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
sarahqd
• 0
0
votes
2
replies
1.5k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
17 months ago
Chruut
• 0
0
votes
2
replies
1.3k
views
Can't select GO from AnnotationHub orgDB packages
GO.db
AnnotationHub
OrgDB
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
Jenny Drnevich
★ 2.0k
0
votes
4
replies
1.4k
views
Error attaching TIN
software error
GO.db
TIN
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
AB3
• 0
0
votes
0
replies
389
views
plotGOTermGraph connects all subtrees to the root node
GO.db
GOstats
11 months ago
RuBBiT0
▴ 10
0
votes
1
reply
1.7k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo
GOSemSim
GO.db
3.9 years ago
Jenny Drnevich
★ 2.0k
0
votes
4
replies
1.1k
views
topGO "argument is of length zero" error
GO.db
topGO
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
fklirono
• 0
0
votes
8
replies
704
views
GOslim missing GO term
GO.db
GOslim
5 months ago
amanda
• 0
0
votes
0
replies
2.3k
views
Trouble with GO.db - installation of package GO.db had non-zero exit status
software error
GO.db
8.0 years ago
christin.berlin
• 0
0
votes
1
reply
683
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 19 months ago by
Basti
▴ 780 • written 19 months ago by
yeluo
• 0
0
votes
4
replies
1.3k
views
GO.db package can't be installed
install
GO.db
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
Enrico
• 0
0
votes
1
reply
1.3k
views
Gene Ontolology and Annotation
Gene Ontolology
Annotation
GO.db
org.Sc.sgd.db
org.Hs.eg.db
updated 8.3 years ago by
Diego Diez
▴ 760 • written 8.3 years ago by
msp.cse
• 0
0
votes
1
reply
1.3k
views
GO.db/GOSim bugged or my bad?
go.db
software error
bug
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
lejeczek
▴ 10
0
votes
1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db
goseq
package installation
error
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
veerle
• 0
0
votes
1
reply
1.7k
views
Error attaching GO.db package
GO.db
loadnamespace
annotation
chippeakanno
updated 9.2 years ago by
Dan Tenenbaum
★ 8.2k • written 9.2 years ago by
adrianna-christina
▴ 10
0
votes
1
reply
380
views
Which species does GO.db use
GO.db
annotationTools
updated 9 months ago by
Lluís Revilla Sancho
▴ 730 • written 9 months ago by
youngleel
• 0
0
votes
1
reply
912
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 2.6 years ago by
James W. MacDonald
65k • written 2.6 years ago by
cmfield
• 0
0
votes
1
reply
1.5k
views
GO.db, pfma.db, KEGG.db
pfam
go.db
kegg.db
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
josefina.lascanomaillard
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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