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News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
8 weeks ago • updated 2 days ago
shepherl
3.8k
1
vote
8
replies
1.5k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.1 years ago by
shepherl
3.8k
3
votes
9
replies
2.3k
views
Bioconductor docker tags and release versions
docker
release
8.9 years ago • updated 8.6 years ago
Karl Forner
▴ 70
7
votes
6
replies
1.7k
views
How to obtain summary statistics for all Bioc releases
bioconductor
release
5.9 years ago
Robert Ivanek
▴ 730
7
votes
4
replies
1.7k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
written 6.0 years ago by
Valerie Obenchain
★ 6.8k
0
votes
5
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.5 years ago • updated 2.0 years ago
shepherl
3.8k
4
votes
11
replies
1.7k
views
News:
Bioconductor 3.8 is released
bioconductor
news
release
News
updated 5.4 years ago by
restat110
• 0 • written 5.5 years ago by
Valerie Obenchain
★ 6.8k
0
votes
2
replies
1.6k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
4.6 years ago • updated 4.4 years ago
shepherl
3.8k
1
vote
3
replies
946
views
PureCN Release Notes
PureCN
Release
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
twtoal
▴ 10
0
votes
1
reply
242
views
News:
Bioconductor 3.19 Release Schedule
Release
release
Software
7 weeks ago • updated 4 weeks ago
shepherl
3.8k
0
votes
1
reply
1.1k
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
4.1 years ago
shepherl
3.8k
0
votes
2
replies
612
views
DESerq2 older releases
deseq2
release
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
Eleni Christodoulou
▴ 150
1
vote
2
replies
877
views
Gallus gallus package genome update release
genome
novel
package
release
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
pertille
• 0
0
votes
4
replies
1.5k
views
Why SPADE package has been removed from bioconductor?
spade
release
remove
clustering
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
a.n.horvath
• 0
5
votes
1
reply
425
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.8k
0
votes
2
replies
1.1k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 6.1 years ago by
shepherl
3.8k
1
vote
1
reply
1.0k
views
Rsync Access
release
rsync
873
updated 3.0 years ago by
Martin Morgan
25k • written 3.0 years ago by
workmanld
▴ 10
1
vote
1
reply
913
views
News:
Issues with annotation packages
annotation
news
release
News
4.0 years ago
kayla.interdonato
▴ 160
0
votes
3
replies
1.1k
views
Bioconductor Release AMI's
Release
release
AWS
AMI
Bioconductor
updated 2.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.0 years ago by
shepherl
3.8k
1
vote
3
replies
1.3k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 5.5 years ago by
Wolfgang Huber
★ 13k • written 5.5 years ago by
shepherl
3.8k
0
votes
1
reply
1.0k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
4.7 years ago • updated 4.6 years ago
shepherl
3.8k
3
votes
3
replies
1.5k
views
Using a single R installation with multiple BioConductor library installations - opinions & best practices sought
version
release
library
updated 9.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.1 years ago by
Malcolm Cook
★ 1.6k
0
votes
1
reply
959
views
News:
Deadline for devel branch 3.9 to pass R CMD build and R CMD check
release
devel
deadline
freeze
News
5.1 years ago
shepherl
3.8k
1
vote
4
replies
541
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene
Bioconductor3.18
DifferentialExpression
release
updated 5 months ago by
Michael Love
41k • written 5 months ago by
Nadine
▴ 60
0
votes
1
reply
849
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.3 years ago
shepherl
3.8k
0
votes
1
reply
861
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
5.0 years ago • updated 4.9 years ago
shepherl
3.8k
0
votes
0
replies
913
views
News:
Bioconductor 3.6 release: stop commits to git.bioconductor.org
bioconductor
release
News
6.5 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
919
views
News:
Bioconductor 3.6 release: new package deadline
package submission
bioconductor
release
News
6.6 years ago
shepherl
3.8k
6
votes
0
replies
1.9k
views
News:
Bioconductor 3.4 is released
news
announcement
release
News
7.5 years ago
Hervé Pagès
16k
0
votes
1
reply
873
views
News:
List of Deprecated Packages for Bioc3.8
package
deprecate
release
news
News
5.9 years ago
shepherl
3.8k
1
vote
1
reply
983
views
News:
DEADLINE: commits to Bioc 3.7
release
bioconductor
packages
package updates
News
6.0 years ago
shepherl
3.8k
0
votes
0
replies
1.1k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
6.0 years ago
shepherl
3.8k
0
votes
0
replies
935
views
News:
Final List of Deprecated Packages for Bioc3.6
bioconductor
release
deprecate
News
6.6 years ago
shepherl
3.8k
0
votes
0
replies
829
views
News:
Ensembl 92 has been released
biomart
ensembl
release
ensembl92
News
6.0 years ago
Thomas Maurel
▴ 800
1
vote
0
replies
819
views
News:
New Package Submission Deadline for Bioc Release 3.9
release
package submission
new packages
deadline
News
5.1 years ago
shepherl
3.8k
0
votes
0
replies
798
views
News:
Deadline for Packages and Data Bioc3.6
release
package submission
News
6.6 years ago
shepherl
3.8k
3
votes
0
replies
1.1k
views
News:
Bioconductor 3.3 is released
release
announcement
News
8.0 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.5k
views
News:
Ensembl GRCh37 release 79 data update
biomart
ensembl
release
news
GRCh37
News
9.1 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
936
views
News:
Release Deadline: Passing R CMD build and R CMD check
package
build
build/check error
check
release
News
6.1 years ago
shepherl
3.8k
0
votes
1
reply
1.1k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
software
devel
News
5.3 years ago
shepherl
3.8k
0
votes
0
replies
886
views
News:
Bioconductor New Package Submission Deadline Today!
new submission
release
News
6.1 years ago
shepherl
3.8k
0
votes
0
replies
806
views
News:
Bioconductor 3.6 release
bioconductor
news
release
News
6.6 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
831
views
News:
Bioconductor 3.7 release schedule
bioconductor
news
release
News
6.1 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
934
views
News:
Package Submission Deadline is TODAY!!
release
package submission
new submission
deadline
News
5.6 years ago
shepherl
3.8k
0
votes
1
reply
1.2k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
5.2 years ago
shepherl
3.8k
2
votes
0
replies
1.1k
views
News:
Bioconductor 3.9 release schedule
bioconductor
release
deadlines
News
5.1 years ago
shepherl
3.8k
1
vote
1
reply
787
views
News:
Ensembl 94 has been released
biomart
release
ensembl
ensembl94
ensemblmart
News
5.6 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
949
views
News:
List of Deprecated Packages for Bioc3.7
package updates
deprecate
release
News
6.1 years ago
shepherl
3.8k
0
votes
0
replies
784
views
News:
Deadline for commits to current Release 3.8 Branch
release
freeze
deadline
News
5.1 years ago
shepherl
3.8k
1
vote
1
reply
1.2k
views
News:
Ensembl 90 has been released
ensembl
biomart
ensembl90
release
News
6.7 years ago
Thomas Maurel
▴ 800
50 results • Page
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Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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