10 months ago • updated 14 days ago
shepherl
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Gordon Smyth
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Ryan C. Thompson
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8 weeks ago • updated 8 days ago
shepherl
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2
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6
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150
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Gordon Smyth
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written 9.8 years ago by
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40
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5
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250
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1.7k
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7
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426
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7 weeks ago • updated 5 weeks ago
fr8712ca-s
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2
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50
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1.3k
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2
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3
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804
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10
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6
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1.2k
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updated 8 weeks ago by
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written 19.0 years ago by
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4
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738
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14
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5
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180
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3
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21.2 years ago • updated 10 months ago
Gordon Smyth
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written 12.0 years ago by
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40
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470
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740
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20
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9 months ago • updated 8 months ago
Gerhard Thallinger
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180
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written 6.5 years ago by
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updated 6 months ago by
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written 19 months ago by
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updated 9 months ago by
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written 6.2 years ago by
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5.8k
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updated 7 weeks ago by
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written 2.3 years ago by
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40
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written 8.9 years ago by
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2
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6
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1.3k
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updated 12 months ago by
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written 17 months ago by
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updated 6 months ago by
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updated 7 months ago by
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written 17 months ago by
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★
4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
•
0
Thank for your response. It is Illumina 450 K. I use this code
```{r }
library(IlluminaHumanMethylation450kanno.ilmn12.hg19)
annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★
5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed):
```
limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
•
0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
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