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Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
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DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
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incorrect number of dimensions in probeSetSummary function from GOstats
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Differential analysis of protein spectral counts using msnSet object
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Limma analysis with multiple variables
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compareCluster error: On clusterProfiler DEGs enrichments analysis
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5.6 years ago tpm • 0
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GEOquery: preprocessing log of imported data
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size factor not 1
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updated 5.6 years ago by 68k • written 5.6 years ago by • 0
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3
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deseq2 - paired samples in 2 sequencing types with very different library sizes
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906
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Which internal tool does DiffBind uses to count BAM reads to calculate sizeFactor?
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use diffbind with normilized bedgraph files from spike ins
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updated 5.6 years ago by ★ 5.2k • written 5.7 years ago by ▴ 10
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DiffBind count() error or it crashes R Studio
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2
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ComplexHeatmap's UpSet plots: how to convert a binary matrix into a list of sets
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5.6 years ago moldach ▴ 20
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2
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6.8k
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plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
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scRNA-seq question, assayData() error
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 10
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readMSData and netCDF files, only TIC intensity available
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5.6 years ago julien.kermorvant ▴ 30
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5.6 years ago canfield ▴ 10
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How to imports DS field from VCF files with SeqArray seqVCF2GDS()
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Extracting raw read counts in DiffBind consensus peak set
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updated 5.6 years ago by ★ 5.2k • written 5.6 years ago by • 0
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Compare ranges from two GRanges and check if the ranges from the first GRanges is contained in another.
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updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 50
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3
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CRISPRseek adjustments for Cpf1/Cas12a
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updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
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Reporting S values? Reporting padj values?
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updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 20
0
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0
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Error using tximport on Salmon with sparseMatrix on scaledTPM option
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
1
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0
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678
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fastMNN reconstructed matrix
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5.6 years ago mloza ▴ 10
0
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0
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989
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Author footnotes in BiocWorkflowTools::f1000_article template
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5.6 years ago helucro ▴ 70
46,709 results • Page 163 of 935
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Comment: Converting Probe IDs to HGNC symbols by nana • 0
Converting probe IDs to HGNC gene symbols depends on the platform the probes come from (Affymetrix, Illumina, Agilent, etc.). Below are the…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
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Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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