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3
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5.5k
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bioCLite instalation failed
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5.6 years ago emily.biostats.1999 • 0
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the result of swish function from fishpond package
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Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
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RnBeads::combine() - error?
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Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
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DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
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5.6 years ago hamza_karakurt ▴ 60
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5
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No enriched GO terms with 1000 more genes
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5.6 years ago Ruixuan ▴ 10
0
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1
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incorrect number of dimensions in probeSetSummary function from GOstats
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1
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3
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Highlight uniq transcripts in Gviz
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
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2
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Differential analysis of protein spectral counts using msnSet object
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
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2
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GenomicFeatures load problem : "namespaceExport(ns, exports): undefined exports: %>%"
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updated 5.6 years ago by 25k • written 5.6 years ago by • 0
2
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7
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Limma analysis with multiple variables
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compareCluster error: On clusterProfiler DEGs enrichments analysis
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5.6 years ago tpm • 0
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3
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GEOquery: preprocessing log of imported data
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840
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size factor not 1
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updated 5.6 years ago by 68k • written 5.6 years ago by • 0
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3
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deseq2 - paired samples in 2 sequencing types with very different library sizes
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0
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906
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Which internal tool does DiffBind uses to count BAM reads to calculate sizeFactor?
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updated 5.6 years ago by ★ 5.2k • written 5.6 years ago by ▴ 10
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1.9k
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use diffbind with normilized bedgraph files from spike ins
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updated 5.6 years ago by ★ 5.2k • written 5.7 years ago by ▴ 10
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671
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2
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5.6 years ago shepherl 4.2k
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ComplexHeatmap's UpSet plots: how to convert a binary matrix into a list of sets
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5.6 years ago moldach ▴ 20
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2
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plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
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scRNA-seq question, assayData() error
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 10
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2
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readMSData and netCDF files, only TIC intensity available
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5.6 years ago julien.kermorvant ▴ 30
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5.6 years ago mloza ▴ 10
6
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6
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1
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2
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5.6 years ago canfield ▴ 10
1
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1
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2.2k
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How to imports DS field from VCF files with SeqArray seqVCF2GDS()
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1
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8
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3.6k
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Extracting raw read counts in DiffBind consensus peak set
DiffBind
updated 5.6 years ago by ★ 5.2k • written 5.6 years ago by • 0
8
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10
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3.3k
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Compare ranges from two GRanges and check if the ranges from the first GRanges is contained in another.
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updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 50
1
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3
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1.2k
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CRISPRseek adjustments for Cpf1/Cas12a
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updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
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4
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3.1k
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Reporting S values? Reporting padj values?
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updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 20
0
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0
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1.2k
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2
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3
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Error using tximport on Salmon with sparseMatrix on scaledTPM option
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
1
vote
0
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678
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fastMNN reconstructed matrix
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5.6 years ago mloza ▴ 10
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Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
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