Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
3
votes
16
replies
2.2k
views
DESeq2 - groups with biological replicates from the same patient
DESeq2
updated 4 months ago by
shepherl
3.9k • written 2.9 years ago by
S
▴ 10
3
votes
12
replies
2.2k
views
t.test to determine the P-value in DESeq2
DESeq2
written 19 months ago by
Maryam.sed1400
• 0
3
votes
5
replies
2.2k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 3 months ago by
sup0903
• 0 • written 3.4 years ago by
Hongbii
• 0
3
votes
6
replies
2.2k
views
Result from GSEA for non-model organism not as expected
clusterProfiler
updated 5 months ago by
James W. MacDonald
66k • written 19 months ago by
Susanne
▴ 10
0
votes
6
replies
2.2k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 6 months ago by
ATpoint
★ 4.2k • written 17 months ago by
laujihen
• 0
1
vote
5
replies
2.2k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.3 years ago by
chandlerjd58
▴ 10
0
votes
1
reply
2.1k
views
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Network
cluster
WGCNA
RNASeq
updated 10 months ago by
James W. MacDonald
66k • written 10 months ago by
chiwut.wong
• 0
4
votes
4
replies
2.1k
views
Unlog transformed data in DESeq2
RNASeq
DESeq2
vst
rlog
Normalization
updated 5 months ago by
Gordon Smyth
50k • written 2.4 years ago by
mohammedtoufiq91
▴ 10
1
vote
10
replies
2.1k
views
Interprteting the phylogenomic profiles plot
syntenet
synteny
Network
written 18 months ago by
Alexandros
• 0
4
votes
7
replies
2.1k
views
should statmod be a dependency of limma and not a suggests?
limma
updated 9 months ago by
Gordon Smyth
50k • written 8.0 years ago by
nathan
• 0
0
votes
5
replies
2.1k
views
How can I limit the number of displayed genes in heatplot
heatplot
enrichplot
updated 8 months ago by
ruba-mahmoud
• 0 • written 17 months ago by
Melanie
• 0
0
votes
11
replies
2.1k
views
globaltest question
Pathways
probe
affy
Pathways
probe
affy
written 17.7 years ago by
mike Ad.
▴ 30
0
votes
2
replies
2.1k
views
Creating a qPCRset object from a text file
qPCRset object
nondetects
r
package
txt
updated 7 months ago by
Nat.Nataren
• 0 • written 6.4 years ago by
s.m.may
• 0
0
votes
2
replies
2.1k
views
ChAMP::champ.norm Error in champ.BMIQ(beta[, x], design.v, sampleID = colnames(beta)[x], : task 1 failed - "only defined on a data frame with all…
ChAMP
methylation
BMIQ
updated 6 months ago by
peter.brederlo
• 0 • written 5.0 years ago by
moldach
▴ 20
0
votes
3
replies
2.1k
views
maSigPro genes from clusters
masigpro
clustering
updated 5 days ago by
anne-laure
• 0 • written 7.9 years ago by
ls299
• 0
15
votes
23
replies
2.1k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
7 weeks ago • updated 22 days ago
Chris
▴ 10
0
votes
14
replies
2.1k
views
Error while preprocessing raw data from methylation array using minfi package
minfi
updated 3 months ago by
nguyen
• 0 • written 8 months ago by
Deepa
• 0
2
votes
6
replies
2.0k
views
clusterProfiler for KEGG enrichment (non-model species) Over-Representation Analysis
KEGG
clusterProfiler
updated 4 months ago by
Guido Hooiveld
★ 4.0k • written 14 months ago by
ruiqi.li
▴ 10
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation
affy
oligo
ffpe
Annotation
affy
oligo
ffpe
written 10.4 years ago by
Guest User
★ 13k
0
votes
1
reply
2.0k
views
Error with phyloseq R package with Conda install
software error
phyloseq
anaconda
written 7.6 years ago by
kpitz23
• 0
2
votes
2
replies
2.0k
views
humann2 output appropriate for EdgeR or DESeq2 analysis
edger
deseq2
updated 9 months ago by
marjim
• 0 • written 6.4 years ago by
nyoungb2
• 0
1
vote
1
reply
2.0k
views
Help with error DiffBind
DiffBind
updated 10 months ago by
Rory Stark
★ 5.2k • written 10 months ago by
Chris
▴ 10
10
votes
11
replies
2.0k
views
tximport error: vroom
tximport
updated 7 months ago by
Abhishek
• 0 • written 7 months ago by
RLiu
▴ 40
2
votes
7
replies
2.0k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC
annotation
rn6
updated 4 months ago by
Raghavaram
• 0 • written 3.7 years ago by
Frédéric Crémazy
• 0
5
votes
3
replies
2.0k
views
Cannot download GEOmetadb sqlite file
GEOmetadb
updated 3 months ago by
ilayahari
• 0 • written 6.5 years ago by
arnaud.ceol.pro
▴ 10
0
votes
4
replies
2.0k
views
Subtracting INPUT reads from ChIP read counts.
diffbind
ChIP-seq
updated 3 months ago by
Rory Stark
★ 5.2k • written 7.9 years ago by
xie186
• 0
1
vote
4
replies
2.0k
views
ComBat Normalisation - data is integers and some floats, confused?!
combat
rnaseq
combatnormalisation
jeffleek
sva
updated 7 months ago by
Hamza
• 0 • written 3.2 years ago by
zeegzaag
• 0
1
vote
3
replies
2.0k
views
Making MDS plot
plotMDS
limma
updated 11 months ago by
Gordon Smyth
50k • written 11 months ago by
liujy4
• 0
5
votes
5
replies
2.0k
views
Archive location for Bioconductor packages
archive
updated 9 months ago by
shepherl
3.9k • written 21 months ago by
ems
▴ 20
4
votes
5
replies
2.0k
views
time course microarray data ArrayExpress database
R
GillespieColin
ArrayExpress
import
TimeSeriesExperiment
updated 7 months ago by
jacorvar
▴ 40 • written 19 months ago by
eraldagjika
▴ 20
8
votes
13
replies
2.0k
views
Interpret plot from DiffBind
DiffBind
updated 11 months ago by
Rory Stark
★ 5.2k • written 12 months ago by
Chris
▴ 10
2
votes
5
replies
2.0k
views
Problem at champ.load
ChAMPdata
ChAMP
updated 10 weeks ago by
James W. MacDonald
66k • written 13 months ago by
angel
• 0
1
vote
1
reply
2.0k
views
Tutorial:
Update gene symbols in GeneSetCollection
gseabase
msigdb
genesetcollection
Tutorial
written 5.9 years ago by
t.kuilman
▴ 170
3
votes
6
replies
1.9k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 6 months ago by
georgersmith
• 0 • written 4.8 years ago by
lim6432
▴ 50
5
votes
6
replies
1.9k
views
Questions about using training sets and WGCNA module eigengenes generated separately for Pigengene package
Pigengene
6 months ago
kjngo
▴ 40
1
vote
3
replies
1.9k
views
DeSEQ 2 Error: some values in assay are negative
Countmatrix
negativeassay
DESeq2
11 months ago
dania.khalid
• 0
10
votes
11
replies
1.9k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq
rnaseq
updated 1 day ago by
Sara
• 0 • written 6.8 years ago by
Sylvain Foisy
▴ 80
0
votes
5
replies
1.9k
views
DESeq LRT test and construction of Co-expression network
LRT
co-expression network
deseq2
time course experiment
network analysis
updated 12 months ago by
Jennifer Dehner
• 0 • written 6.2 years ago by
aishu.jp
▴ 30
0
votes
4
replies
1.9k
views
how to save subsetted GDS file
gwastools
written 6.0 years ago by
Adrienne Stilp
▴ 30
1
vote
3
replies
1.9k
views
enrichKEGG results for non-model organism
clusterProfiler
enrichment
KEGG
updated 3 months ago by
cinzia.spagnoli
• 0 • written 23 months ago by
AP
• 0
4
votes
13
replies
1.9k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 7 months ago by
Hervé Pagès
16k • written 2.7 years ago by
Koki
▴ 10
3
votes
1
reply
1.9k
views
TwoSampleMR and ieugwasr
ieugwasr
clumping
TwoSampleMR
updated 9 weeks ago by
zoheir.alayash
▴ 10 • written 2.2 years ago by
S T
▴ 90
1
vote
3
replies
1.9k
views
DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
DiffBind
R
chipseq
updated 5 months ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
kyliecode
• 0
11
votes
4
replies
1.9k
views
LIMMA dupcor() function time issue.
limma
microarray
block
updated 8 months ago by
Gordon Smyth
50k • written 5.3 years ago by
tleona3
• 0
3
votes
7
replies
1.9k
views
Installing densvis on a Singularity container
densvis
docker
updated 11 months ago by
alan.ocallaghan
▴ 160 • written 13 months ago by
James W. MacDonald
66k
1
vote
4
replies
1.9k
views
JoinLayers function for Seurat Object for annotation with SingleR
SingleR
SeuratscRNA
written 5 months ago by
Bine
▴ 40
1
vote
7
replies
1.9k
views
Error using champ.import
ChAMP
EPICv2
updated 5 weeks ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
1
vote
6
replies
1.9k
views
Rsubread - Error on buildindex - big ref sequence
Rsubread
updated 10 months ago by
Yang Liao
▴ 380 • written 4.2 years ago by
bryan.penning
• 0
0
votes
7
replies
1.9k
views
error with champ.load
ChAMP
champ
methylation
updated 9 months ago by
mike
• 0 • written 4.1 years ago by
jkong
• 0
2
votes
7
replies
1.9k
views
Issue with GSVA using dgCMatrix
GSVA
updated 11 weeks ago by
Moritz
▴ 10 • written 2.9 years ago by
resa
• 0
1,746 results • Page
4 of 35
Recent ...
Replies
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf
by
James W. MacDonald
66k
How (why?) are you loading `BiocManager` via namespace instead of loading the library? Try attaching as normal and see if that helps.
Comment: enrichGOgradient color change
by
Javier
• 0
Is it possible in some way to get it done in the same code, something like this (it doesn't work): clusterProfiler::dotplot(ego, showCateg…
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
by
shepherl
3.9k
An outage was reported at the location we store the Bioconductor archives. We are in process of temporarily activating a different backup …
Answer: unable to access bioconductor packages - qvalue installation failed...
by
shepherl
3.9k
An outage was reported at the location we store the Bioconductor archives. We are in process of temporarily activating a different backup …
Comment: Get gene symbols for a set of hg19 coordinates
by
pcantalupo
▴ 10
Now why didn't I think of that? I had tunnel vision thinking I needed to use an annotation package. Thank you ATpoint!
Votes
Seurat to SingleCellExperiment Converting error in MAC
Error when converting Seurat to SingleCellExperiment
Comment: unable to access bioconductor packages - qvalue installation failed...
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
Comment: miRTarRnaseq library
Awards
• All
Scholar
to
ATpoint
★ 4.2k
Popular Question
to
boczniak767
▴ 720
Popular Question
to
mgdrnl
• 0
Popular Question
to
Lorena Pantano
▴ 140
Popular Question
to
merv
▴ 120
Locations
• All
United States,
9 minutes ago
United States,
11 minutes ago
United States,
17 minutes ago
Italy,
24 minutes ago
Ghent University, Belgium,
26 minutes ago
Traffic: 828 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6