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0
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4
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3.2k
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Unable to load qvalue package
qvalue
10.0 years ago
lgvazdela
• 0
1
vote
6
replies
2.3k
views
flowWorkspace: Crash when using getPopStats with format="wide"
flowworkspace
10.0 years ago
Viktor Thiel
• 0
0
votes
0
replies
1.8k
views
Problems in building Cummerbundcuff Database
cummerbund
readcufflinks
geneset
10.0 years ago
alessio.stevano
• 0
1
vote
1
reply
2.8k
views
Generating unexpected peaks from DiffBind
diffbind
chipseq
updated 10.0 years ago by
Rory Stark
★ 5.2k • written 10.1 years ago by
michael.alexander.finger
• 0
1
vote
3
replies
3.7k
views
How to reproduce the PCA plot from DiffBind
diffbind
updated 10.0 years ago by
Rory Stark
★ 5.2k • written 10.1 years ago by
r.chereji
• 0
0
votes
1
reply
1.2k
views
Access MarkerList attribute
cellmix
10.0 years ago
thrabe
• 0
9
votes
8
replies
7.6k
views
sva + egdeR - differential expression analysis - RNA-seq data
sva
edgeR
10.0 years ago
mrodrigues.fernanda
▴ 10
0
votes
2
replies
1.7k
views
QuasR alignment interruption
quasr
updated 10.0 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 10.0 years ago by
nadia_boufaied
• 0
0
votes
2
replies
1.9k
views
UPC method giving error for Microarray dataset
scan.upc
UPC
updated 10.0 years ago by
Stephen Piccolo
▴ 600 • written 10.0 years ago by
Vani
▴ 20
2
votes
2
replies
3.0k
views
order of covariates for GLM with edgeR
edger
differential expression
covariate
batch effect
glm
updated 10.0 years ago by
Gordon Smyth
53k • written 10.1 years ago by
aec
▴ 90
1
vote
2
replies
2.1k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 10.0 years ago by
Dan Tenenbaum
★ 8.2k • written 10.0 years ago by
anthonycolombo60
• 0
2
votes
3
replies
6.0k
views
Pathview None of the genes or compounds mapped to the pathway
pathview
pathways
KEGG
empty map
updated 4.5 years ago by
najib
• 0 • written 10.0 years ago by
Dani
▴ 20
0
votes
4
replies
3.3k
views
How to import vcf with multi sample?
vcf
readvcf
readvcfasvranges
10.0 years ago
Marcin Grzybowski
• 0
0
votes
3
replies
4.4k
views
how to use Normalized gene expression data in Deseq2?
Deseq2
updated 10.0 years ago by
Gordon Smyth
53k • written 10.0 years ago by
mheydarpour
▴ 10
0
votes
0
replies
1.4k
views
Error processing Infinium 450K Methylation data using Minfi
minfi
software error
methylation
illumina450k
10.0 years ago
pm2015
• 0
0
votes
0
replies
1.3k
views
News:
bioconductor.org scheduled downtime, Thursday, December 31st, 12:01PM PST
downtime
News
10.0 years ago
Dan Tenenbaum
★ 8.2k
2
votes
1
reply
860
views
making a factor numeric
software error
10.0 years ago
Angel
▴ 40
0
votes
1
reply
1.5k
views
Using dispersion per gene to run Wald test (DESeq2)
deseq2
updated 10.0 years ago by
Michael Love
43k • written 10.0 years ago by
meisan406
• 0
2
votes
2
replies
1.7k
views
Is shellinabox support a feature of all Bioconductor Amazon Machine Images?
ami
updated 10.0 years ago by
Dan Tenenbaum
★ 8.2k • written 10.0 years ago by
joshmobrien
• 0
0
votes
1
reply
1.5k
views
Error with SCAN.UPC UPC_RNASeq method
scan.upc
RNA-Seq
UPC
10.1 years ago
vn
• 0
2
votes
2
replies
1.7k
views
I'm looking for a filtering method that it does't use genewise variances
genefilter
liimma
microarray
updated 10.1 years ago by
Wolfgang Huber
★ 13k • written 10.1 years ago by
Shamim Sarhadi
▴ 20
0
votes
1
reply
1.1k
views
problem in biophysconnector package
software error
10.1 years ago
Angel
▴ 40
0
votes
1
reply
1.5k
views
Converting Mascot.dat files to csv
isobar
10.1 years ago
paul.jenoe
• 0
0
votes
9
replies
7.5k
views
unable to update mgcv package
mgcv
snprelate
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
mail2vignesh1985
• 0
0
votes
4
replies
1.9k
views
edgeR Code syntax for without replicate
edger
updated 10.1 years ago by
Aaron Lun
★ 29k • written 10.1 years ago by
Sushant Pawar
• 0
4
votes
4
replies
2.8k
views
Suggestions for non-specific filtering criteria with limma
limma
genefilter
updated 10.1 years ago by
Wolfgang Huber
★ 13k • written 10.1 years ago by
rvinisko
▴ 10
3
votes
3
replies
2.4k
views
Read in specific rows of a BAM file that match a certain RNAME
scanbamparam
bam
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
KB
▴ 50
0
votes
2
replies
1.6k
views
Error in heatmap()
heatmap
updated 10.1 years ago by
James W. MacDonald
68k • written 10.1 years ago by
libya.tahani
• 0
3
votes
7
replies
3.1k
views
Dealing with missing samples in limma and design matrix questions
limma paired analysis
limma design matrix
illumina beadchip
10.1 years ago
clevy
▴ 10
7
votes
16
replies
3.4k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 10.1 years ago by
James W. MacDonald
68k • written 10.1 years ago by
Robert Castelo
★ 3.4k
13
votes
3
replies
5.1k
views
EdgeR cpm: factor of 2 when adjusting library size?
edger
cpm
10.1 years ago
mikaelhc
▴ 20
0
votes
1
reply
3.2k
views
AnnotationHub - Problem with SSL CA certificate
annotationhub
dependencies
10.1 years ago
dalloliogm
▴ 50
0
votes
1
reply
880
views
Modify column names of big data frame
annotation
updated 10.1 years ago by
b.nota
▴ 370 • written 10.1 years ago by
qurrat.ulain
▴ 10
6
votes
5
replies
2.7k
views
Limma : design and contrast for a timecourse experiment with 2 cell lines
limma
limma design matrix
timecourse
10.1 years ago
Pierre-François Roux
• 0
0
votes
0
replies
1.5k
views
Question about lumiT warning message
lumi
10.1 years ago
clevy
▴ 10
0
votes
7
replies
2.1k
views
errors for goseq makeOrgPackageFromNCBI in AnnotationForge
go
updated 10.1 years ago by
James W. MacDonald
68k • written 10.1 years ago by
songeric1107
• 0
2
votes
7
replies
3.5k
views
edgeR for with no Replicate
edger
without replicate
updated 10.1 years ago by
Yunshun Chen
▴ 900 • written 10.1 years ago by
Sushant Pawar
• 0
0
votes
0
replies
1.6k
views
ChAMP MDS 1000 most variable positions
champ
MDS
10.1 years ago
Eric Smith
• 0
0
votes
5
replies
5.5k
views
how to design a formula in DEseq2 that control for the effect of putative confounders?
Deseq2
dds
confounders
updated 10.1 years ago by
Michael Love
43k • written 10.1 years ago by
colaneri
▴ 30
0
votes
5
replies
5.6k
views
Statistical power of limma vs mixed model approach to analyze microarray and differentialproteomics/peptidomics experiments and Poisson/binomial mixe…
limma
maanova
rnaseq
12.5 years ago • updated 4.1 years ago
Gordon Smyth
53k
0
votes
0
replies
1.4k
views
Job:
Looking for several bioinformaticians up to the level of Research Assistant Professor
bioinformatician job
Job
10.1 years ago
Julie Zhu
★ 4.3k
4
votes
9
replies
9.7k
views
Upper triangular matrix heatmap using pheatmap package
pheatmap
10.1 years ago
Deepak Tanwar
▴ 10
0
votes
8
replies
1.9k
views
Get ID Mapping right
annotation
getsymbol
updated 10.1 years ago by
James W. MacDonald
68k • written 10.1 years ago by
thrabe
• 0
0
votes
2
replies
2.0k
views
DiffBind: correlation heat map
diffbind
updated 10.1 years ago by
Rory Stark
★ 5.2k • written 10.1 years ago by
r.chereji
• 0
1
vote
3
replies
2.1k
views
DESeq2: deduce variable for design formula based on sample_info columns (Rscript)
deseq2
updated 10.1 years ago by
Michael Love
43k • written 10.1 years ago by
wouter.de.coster
• 0
0
votes
1
reply
1.5k
views
UPC RNA-Seq individual samples
scan.upc
upc
rnaseq
updated 10.1 years ago by
Stephen Piccolo
▴ 600 • written 10.1 years ago by
Jo
▴ 30
2
votes
4
replies
6.0k
views
diffbind and macs2 output
diffbind
macs2
updated 10.1 years ago by
Gord Brown
▴ 670 • written 10.1 years ago by
tony
▴ 10
1
vote
2
replies
1.7k
views
How do I retrieve consensus peakset?
diffbind
peakset
updated 10.1 years ago by
Gord Brown
▴ 670 • written 10.1 years ago by
eli7javasky
• 0
1
vote
6
replies
4.5k
views
failed to load 'AnnotationHub' resource
annotationhub
annotation
error
10.1 years ago
elhananby
▴ 10
0
votes
1
reply
1.6k
views
Error in MetaQC R package.
r
metaqc
microarray
geneexpression
10.1 years ago
Agaz Hussain Wani
▴ 260
46,712 results • Page
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Answer: Combining two proteomics datasets with limpa
by
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Comment: Guitar R package requires update due to dependency GenomicFeatures
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