0
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0
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2.0k
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News: Ensembl 83 is out!
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10.1 years ago amonida ▴ 20
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10
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FourC object from scratch
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10.2 years ago • updated 10.1 years ago Nicolas Servant ▴ 260
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13
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Finding the coordinates from a BCV plot in edgeR
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10.1 years ago pertille • 0
2
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3
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allele specific expression in edgeR/DESeq
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updated 10.1 years ago by ★ 29k • written 10.1 years ago by ▴ 30
1
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2
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1.6k
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flowWorkspace doesn't allow channels that are named as subset (edit: substring) of other (PE-A and PE-Alexa Fluor 700-A eg.)
flowWorkspace
updated 10.1 years ago by ★ 1.3k • written 10.1 years ago by ▴ 10
0
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ChAMP: champ.runCombat error
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10.1 years ago Brian Smith ▴ 120
2
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7
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2.6k
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ggbio, RnBeads and 3.2.2
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10.1 years ago areyoujokingme • 0
1
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2
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1.9k
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rhdf5 H5Dget_create_plist implementation
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updated 10.1 years ago by ▴ 550 • written 10.1 years ago by • 0
0
votes
1
reply
3.3k
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WGCNA data format?
WGCNA coexpression microarray
updated 10.1 years ago by ★ 3.0k • written 10.1 years ago by • 0
0
votes
1
reply
2.2k
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PLIER normalization for Affymetrix GeneChip arrays?
microarray affymetrix oligo RMA normalization
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 20
3
votes
1
reply
1.9k
views
what is fitProbeLevelModel()? doing
affymetrix oligo microarray
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 20
0
votes
1
reply
2.0k
views
Error when running "eset <- rma(affyRaw)"
rma
updated 10.1 years ago by ★ 1.1k • written 10.1 years ago by • 0
1
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3
replies
2.0k
views
confused about bioconductor/release_microarray:3.2 tag
docker microarray
10.1 years ago Karl Forner ▴ 70
1
vote
3
replies
2.1k
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RUVseq coefficients for unwanted variance in design matrix
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10.1 years ago tonja.r ▴ 80
2
votes
10
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3.1k
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How to find the amino acid codons corresponding to a subset of a range of genomic positions
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updated 10.1 years ago by ★ 11k • written 10.1 years ago by ▴ 10
0
votes
10
replies
2.7k
views
Running gmap tool via gmapR package?
gmapR
updated 10.1 years ago by ★ 11k • written 10.1 years ago by ▴ 90
0
votes
0
replies
1.0k
views
test data doesn't work and makeRBD function doesn't work either at BubbleTree
software error
10.1 years ago jial2 • 0
0
votes
0
replies
1.8k
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getTagMatrixList question from ChIPSeeker package
chipseeker
10.1 years ago Ana.SastrePerona • 0
0
votes
1
reply
1.8k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures genomicranges cds overlap
updated 4.1 years ago by • 0 • written 10.1 years ago by ▴ 10
1
vote
2
replies
4.1k
views
Error in installation S4Vectors package
s4vectors
updated 10.1 years ago by ★ 8.2k • written 10.1 years ago by • 0
4
votes
6
replies
3.7k
views
DESeq2 Factorial Design correcting for Batch + Lane + RIN
deseq2
updated 10.1 years ago by 43k • written 10.1 years ago by • 0
2
votes
4
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2.4k
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edgeR analysis in diffbind
edger diffbind
updated 10.1 years ago by ★ 5.2k • written 10.1 years ago by ▴ 80
6
votes
11
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5.0k
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edgeR on extremely large dataset
edgeR rnaseq
10.1 years ago martiningi ▴ 40
12
votes
6
replies
13k
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makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
software error maketxdbfrombiomart
updated 10.1 years ago by • 0 • written 10.2 years ago by ▴ 40
2
votes
4
replies
4.7k
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Limma log transform RNA-seq and microarray
limma
updated 10.1 years ago by ★ 29k • written 10.1 years ago by ▴ 60
3
votes
7
replies
2.5k
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edger glm, classic, dispersions
edger
updated 10.1 years ago by ★ 29k • written 10.1 years ago by ▴ 80
2
votes
6
replies
38k
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Installing Bioclite.R Package
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10.1 years ago louiseapps2 • 0
4
votes
4
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2.1k
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edgeR:processAmplicons barcode match only 57% when it should be 100% -- I artificially inserted them -- are there other assumptions
edgeR processamplicons shrna
updated 10.1 years ago by • 0 • written 10.2 years ago by ▴ 10
0
votes
1
reply
1.4k
views
errors for makeOrgPackageFromNCBI in AnnotationForge
AnnotationForge
updated 10.1 years ago by 16k • written 10.1 years ago by • 0
4
votes
5
replies
4.1k
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How to find the amino acid codon corresponding to a translated genomic position
genomicranges genomicfeatures translation
updated 23 months ago by ▴ 10 • written 10.1 years ago by ▴ 10
2
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4
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1.6k
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convert a character vector into a numeric vector
differential gene expression
updated 10.1 years ago by ★ 29k • written 10.1 years ago by • 0
0
votes
3
replies
2.1k
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DEXSeqHTML parallelization error
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10.1 years ago Neel Aluru ▴ 460
1
vote
2
replies
4.2k
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Converting annotation from UCSC to Ensembl
ensembl ucsc annotation
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 110
0
votes
3
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3.5k
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get trimmed sequences based on cigar string in genomic alignments
genomicalignments
updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 90
0
votes
7
replies
2.5k
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Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures maketxdbfromgff tx_type gtf
updated 10.1 years ago by 16k • written 10.1 years ago by • 0
0
votes
2
replies
2.5k
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seemingly erratic responses to different getBM biomaRt requests depending on the attributes requested
getbm biomart
updated 10.1 years ago by ▴ 800 • written 10.1 years ago by ▴ 10
0
votes
1
reply
1.8k
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Extract SNPs and INDELs
hsapiens snps indels
updated 10.1 years ago by 16k • written 10.1 years ago by • 0
0
votes
4
replies
1.4k
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DESeq2_multiple correction_no significance
deseq2
10.1 years ago tg369 ▴ 10
1
vote
7
replies
1.7k
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Comparison gene expression among different Drosophila species with EdgeR
edger
updated 10.1 years ago by ★ 29k • written 10.1 years ago by • 0
3
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2
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5.0k
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BiomaRt Arabidopsis genome unavailable
biomart retrive sequence
10.1 years ago oberlins ▴ 10
0
votes
5
replies
3.0k
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DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
10.1 years ago par.larsson • 0
6
votes
0
replies
3.1k
views
News: F1000 research sponsored prize for contribution to Support forum
news News
10.1 years ago Mark Dunning ★ 1.1k
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vote
4
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2.1k
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unimod through pwiz library?
mzR Rcpp
updated 10.1 years ago by 1.6k • written 10.1 years ago by • 0
0
votes
1
reply
1.2k
views
How to analyse flowdata staring with the fcs files till the end?
flow cytometry
updated 10.1 years ago by 16k • written 10.1 years ago by • 0
2
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2
replies
2.2k
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How to FlowCore
flowcore flow cytometry
updated 10.1 years ago by ★ 1.3k • written 10.1 years ago by • 0
0
votes
4
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2.1k
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missing gene_ids in org.Mm.egENSEMBL
org.mm.eg.db annotation
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 30
0
votes
0
replies
926
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Rsamtools scanTabix segfault
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10.1 years ago heinig • 0
2
votes
4
replies
2.2k
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DEXSeqDataSet example code
DEXSeq
updated 10.1 years ago by • 0 • written 10.1 years ago by ▴ 20
1
vote
17
replies
2.8k
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VariantTools problem causing R crash
varianttools gmapr
updated 10.1 years ago by ★ 11k • written 10.1 years ago by ★ 2.1k
0
votes
1
reply
1.4k
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DiffHic package - heatmap generation from normalized data
diffhic
updated 10.1 years ago by ★ 29k • written 10.1 years ago by • 0
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