1
vote
1
reply
1.5k
views
Problems with parsing of geom_alignment()'s type column (from ggbio)
ggbio geom_alignment
updated 10.8 years ago by ★ 11k • written 11.0 years ago by ▴ 20
0
votes
1
reply
1.7k
views
Error from BSgenome forge using .2bit file
BSgenome forge 2bit bsgnome forge 2bit file
updated 10.8 years ago by 16k • written 10.9 years ago by • 0
2
votes
1
reply
1.8k
views
How do I create BSgenome Bos_taurus_UMD3.1?
bsgenome forge bovine
updated 10.8 years ago by 16k • written 10.9 years ago by • 0
4
votes
5
replies
4.9k
views
Adding gene names to rlog transformations for heatmaps?
deseq2 gplot
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
2
votes
2
replies
5.3k
views
EdgeR with normalized data
r edger de
updated 10.8 years ago by ★ 13k • written 10.8 years ago by • 0
0
votes
0
replies
1.2k
views
Biseq clusterSites/filterBySharedRegions.R typo in manual with easy fix
typo manual fix
10.8 years ago mnaymik ▴ 10
3
votes
2
replies
2.3k
views
Gviz - Arrow Head Resizing
gviz
10.9 years ago • updated 10.8 years ago bst ▴ 10
0
votes
2
replies
4.0k
views
the most efficient R package to storage sparse matrix
package sparse matrix
11.0 years ago • updated 10.8 years ago ywhzau • 0
0
votes
3
replies
1.8k
views
Gviz IdeogramTrack fails if species has no band information
gviz ideogram
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by • 0
0
votes
1
reply
971
views
Citations for TRIGGER
updated 10.9 years ago by ▴ 100 • written 13.1 years ago by ▴ 40
2
votes
10
replies
3.7k
views
Package qvalue - can it be installed without TCL-TK support?
qvalue qvalue
updated 10.9 years ago by ▴ 100 • written 11.7 years ago by ▴ 170
1
vote
3
replies
2.6k
views
Error using RSubread to buildIndex with large Fasta
rsubread
updated 10.9 years ago by ★ 3.6k • written 10.9 years ago by ▴ 30
15
votes
12
replies
79k
views
[DESEQ2] How to access the normalized data of a DESeqDataSet
deseq2
updated 10.9 years ago by ★ 13k • written 10.9 years ago by ▴ 130
0
votes
1
reply
1.3k
views
AWS set up
bioconductor aws
10.9 years ago zhihuang • 0
13
votes
20
replies
16k
views
Can I feed TCGA normalized count data to EdgeR for differential gene expression analysis
EdgeR TCGA normalized count
updated 10.9 years ago by ▴ 130 • written 10.9 years ago by ▴ 20
2
votes
1
reply
1.2k
views
Plot coverage in a presentation for GenomicFeatures
genomicfeatures
updated 10.9 years ago by ★ 11k • written 10.9 years ago by ▴ 20
2
votes
6
replies
4.1k
views
voom/limma contrast for comparing one level against base-line
limma voom contrast
updated 10.9 years ago by ★ 13k • written 10.9 years ago by ▴ 80
1
vote
2
replies
2.0k
views
MEDIPS - RPKM
MEDIPS
10.9 years ago malbert1 • 0
2
votes
4
replies
2.8k
views
ReactomePA : error with gsePathway
ReactomePA gsePathway
updated 10.9 years ago by ★ 1.2k • written 10.9 years ago by ▴ 140
0
votes
2
replies
2.2k
views
Calculate the expression of gene
genomicranges iranges
updated 10.9 years ago by 68k • written 10.9 years ago by ▴ 20
3
votes
2
replies
4.0k
views
TMM normalisation method
Csaw csaw
10.9 years ago sergio.espeso-gil • 0
3
votes
3
replies
2.0k
views
Using a single R installation with multiple BioConductor library installations - opinions & best practices sought
version release library
updated 10.9 years ago by ▴ 400 • written 10.9 years ago by ★ 1.6k
0
votes
2
replies
2.8k
views
Error reading vcf converted from bed file
readvcf plink file conversion bed bioc-devel
10.9 years ago mjsduncan • 0
0
votes
6
replies
4.9k
views
cummeRbund installation error on Ubuntu 14.04
software error cummerbund ubuntu
11.1 years ago • updated 10.9 years ago mbk0asis • 0
0
votes
4
replies
5.8k
views
Question: How can I filter a vcf file by DP and GQ using the R package VariantAnnotation?
VariantAnnotation Sample Read Depth Phred-Scaled Genotype Quality vcf
updated 10.9 years ago by ★ 6.8k • written 10.9 years ago by • 0
3
votes
4
replies
2.5k
views
Introns at transcript expression level
genomicfeatures iranges
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 20
0
votes
7
replies
2.3k
views
getting error in processSwathData command from the beadarray package
microarray beadarray illumina
updated 10.9 years ago by ★ 6.6k • written 10.9 years ago by • 0
0
votes
2
replies
2.5k
views
error in creating custom "org.MeSH.XXX.db" package with MeSHDbi
annotation annotationdbi rsqlite
10.9 years ago Ceca Bojic ▴ 10
0
votes
3
replies
2.9k
views
HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
10.9 years ago kanacska ▴ 10
0
votes
3
replies
1.8k
views
workflowInstall issues with OS X 10.9-10.10
workflowinstall
updated 10.9 years ago by ★ 8.2k • written 10.9 years ago by • 0
1
vote
2
replies
2.9k
views
rHDF5 problem writing strings in attributes
rhdf5
updated 10.9 years ago by ▴ 550 • written 10.9 years ago by • 0
1
vote
14
replies
11k
views
DESeq Error in round(assay(se)) : non-numeric argument to mathematical function
deseq rna-seq
10.9 years ago rodriguez.varenka • 0
1
vote
0
replies
2.3k
views
Job: PhD position - Heidelberg: Bioinformatic analysis of high-throughput and image-based RNAi screening data
high-throughput screening RNAi image analysis data integration visualization Job
10.9 years ago e.schmidt ▴ 10
0
votes
1
reply
1.4k
views
MEDIPS : Populating fragments from Paired End reads
medips
updated 10.9 years ago by ▴ 570 • written 10.9 years ago by • 0
0
votes
7
replies
2.4k
views
Speeding up or replacing Loops to process Bam Reads
genomicranges reads genomicfeatures Bam
10.9 years ago gen ▴ 30
0
votes
0
replies
2.8k
views
Modeling count data that is zero inflated with negative binomial hurdle regression
pscl outliers
updated 10.9 years ago by 21k • written 10.9 years ago by ▴ 30
11
votes
8
replies
5.5k
views
GenomicAlignments: Inverting strand when counting using summarizeOverlaps
summarizeoverlaps genomicalignments
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 10
1
vote
1
reply
1.6k
views
Metagenomeseq package; time series analysis
metagenomeseq software error
updated 10.9 years ago by ▴ 280 • written 10.9 years ago by • 0
2
votes
1
reply
2.8k
views
Are the rlog or VST values from DESeq2 comparable across genes?
deseq2
updated 10.9 years ago by ★ 7.9k • written 10.9 years ago by ▴ 30
0
votes
2
replies
1.7k
views
ShortRead summary stats
shortread illumina
10.9 years ago danova_fr ▴ 20
0
votes
0
replies
1.6k
views
News: Conference in mathematical and quantitative omics, May, 29th, London
conference News
10.9 years ago Tiphaine Martin ▴ 40
0
votes
2
replies
2.0k
views
Show the name of genetic elements and change the color according to its feature using UcscTrack
gviz ucsc
11.0 years ago • updated 10.9 years ago Tiphaine Martin ▴ 40
0
votes
3
replies
2.9k
views
Compute the CpG content for all chromosome like the percentage of G+C
CpG
10.9 years ago Tiphaine Martin ▴ 40
3
votes
10
replies
3.2k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering bioconductor genesymbols expressionset
10.9 years ago svlachavas ▴ 840
1
vote
2
replies
1.6k
views
findOverlaps on GAlignments object
[findOverlaps] [GAlignments]
updated 10.9 years ago by ★ 6.8k • written 10.9 years ago by ▴ 20
1
vote
1
reply
2.3k
views
topGO - genesInTerm returns genes not in the annotation
topGO
10.9 years ago samuel collombet ▴ 140
0
votes
3
replies
3.2k
views
Reading Affymetrix data from pd.hugene.2.0.st using affy
affy pd.hugene.2.0.st hugene20 annotation microarray
10.9 years ago kanacska ▴ 10
0
votes
2
replies
1.4k
views
Error when running goseq (error in makespline)
software error
updated 10.9 years ago by 53k • written 10.9 years ago by ▴ 40
5
votes
11
replies
2.7k
views
edgeR Multifactor Design - Baseline
edgeR multiple factor design
updated 10.9 years ago by 53k • written 10.9 years ago by • 0
0
votes
3
replies
4.3k
views
Proportion of variance explained from edgeR MDS
edgeR
updated 10.9 years ago by 53k • written 12.7 years ago by ▴ 110
46,735 results • Page 465 of 935
Recent ...
Replies
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by TikTs3a3ssalpc • 0
In the Gviz package, individual exon styles like line width or font color are usually global, much like how the Massar Service centralizes …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Votes
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
Awards • All
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to Hervé Pagès 16k
Scholar to Gordon Smyth 53k
Popular Question to shepherl 4.3k
Popular Question to ja569116 • 0
Locations • All
United States, 9 minutes ago
United States, 56 minutes ago
The city by the bay, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
Indonesia, 1 hour ago
Traffic: 2207 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6