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markdown is coming to the support site
markdown
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7.7 years ago • updated 7.1 years ago
Lucas Schiffer
▴ 240
14
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News:
Bioconductor packages now each have a DOI.
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updated 7.5 years ago by
Martin Morgan
25k • written 7.6 years ago by
Sean Davis
21k
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9.2 years ago
Martin Morgan
25k
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Bioconductor teaching week
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7.4 years ago
shepherl
4.1k
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5.5 years ago
Gordon Smyth
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Bioconductor 3.0 is released!
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10.4 years ago
Dan Tenenbaum
★ 8.2k
10
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2
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News:
SUPPORT SITE UPGRADE COMPLETE
SupportSite
updated 4.4 years ago by
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★ 13k • written 4.4 years ago by
shepherl
4.1k
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15
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BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
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8.0 years ago • updated 7.7 years ago
Martin Morgan
25k
10
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1.9k
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News:
European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
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7.6 years ago • updated 7.4 years ago
Aaron Lun
★ 28k
10
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News:
Professor James Taylor
in memoriam
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4.9 years ago
Martin Morgan
25k
10
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3
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Updates to BiocStyle formatting
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7.6 years ago
Andrzej Oleś
▴ 750
9
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2.5k
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News:
Ensembl release 80 is out!
biomart
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Rat
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updated 9.8 years ago by
Sonali Arora
▴ 390 • written 9.8 years ago by
Thomas Maurel
▴ 800
9
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7
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3.4k
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News:
Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016
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updated 8.7 years ago by
shepherl
4.1k • written 9.2 years ago by
Martin Morgan
25k
9
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4
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3.2k
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News:
Experimental data package 'seqc'
seqc
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10.3 years ago
Wei Shi
★ 3.6k
9
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8
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7.1k
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News:
new package `ggtree` in devel branch
ggtree
phylogenetic
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updated 10.1 years ago by
remi.tournebize
▴ 10 • written 10.2 years ago by
Guangchuang Yu
★ 1.2k
8
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10
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2.6k
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News:
Bioconductor 3.2 is released!
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updated 9.4 years ago by
JunLVI
▴ 40 • written 9.4 years ago by
Dan Tenenbaum
★ 8.2k
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3.1k
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updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
Valerie Obenchain
★ 6.8k
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3.4 years ago
shepherl
4.1k
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updated 10.5 years ago by
Wolfgang Huber
★ 13k • written 10.6 years ago by
Dan Tenenbaum
★ 8.2k
8
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Bioconductor 3.15 is Released!
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2.9 years ago
shepherl
4.1k
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BioCAsia, 29-30th November 2018, Melbourne, Australia
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updated 6.3 years ago by
Gordon Smyth
52k • written 6.5 years ago by
Steve Pederson
▴ 170
7
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5
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European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
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updated 9.4 years ago by
Laurent Gatto
1.6k • written 9.5 years ago by
Mark Dunning
★ 1.1k
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Announcing Docker containers for Bioconductor
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10.2 years ago
Dan Tenenbaum
★ 8.2k
7
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4
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1.9k
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Bioconductor 3.7 is released
bioconductor
release
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written 6.9 years ago by
Valerie Obenchain
★ 6.8k
7
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Bioconductor Community Advisory Board Nominees
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updated 5.1 years ago by
Sean Davis
21k • written 5.1 years ago by
Matthew Ritchie
▴ 1000
6
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0
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Bioconductor 3.4 is released
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8.4 years ago
Hervé Pagès
16k
6
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5.4 years ago
shepherl
4.1k
6
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News:
Bioconductor git server is now LIVE!
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7.6 years ago
nitesh.turaga
▴ 140
6
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0
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2.9k
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F1000 research sponsored prize for contribution to Support forum
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9.3 years ago
Mark Dunning
★ 1.1k
6
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3
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3.1k
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News:
New Bioconductor package for dbSNP151
SNPlocs.Hsapiens.dbSNP151.GRCh38
BSgenome
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6.7 years ago
Hervé Pagès
16k
6
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1.3k
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New Package Submission Process
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updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Valerie Obenchain
★ 6.8k
6
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News:
BioC 2015 Annual Conference
BioC2015
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9.9 years ago • updated 9.7 years ago
Martin Morgan
25k
6
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0
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1.2k
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Bioconductor Technical Advisory Board
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5.8 years ago
Martin Morgan
25k
6
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6
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3.9k
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Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 9.8 years ago by
Guangchuang Yu
★ 1.2k • written 9.8 years ago by
Dan Tenenbaum
★ 8.2k
6
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0
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1.5k
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News:
Winners of the 1st Shiny Contest: iSEE
iSEE
shiny
summarizedExperiment
News
5.9 years ago
Aaron Lun
★ 28k
6
votes
1
reply
1.4k
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News:
BioC2019 June 24-27 in New York City
conference
News
6.4 years ago
Levi Waldron
★ 1.1k
5
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0
replies
1.2k
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Bioconductor 3.13 is Released!
Release
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Packages
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3.8 years ago
shepherl
4.1k
5
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0
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1.3k
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News:
Course announcement: Statistical Data Analysis for Genome Scale Biology (CSAMA) - Brixen, Italy 21-26 July 2019
csama
News
6.0 years ago
Wolfgang Huber
★ 13k
5
votes
2
replies
1.6k
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News:
BioC2019 talk/workshop/scholarship submission deadline MARCH 15
BioC2019
News
updated 6.1 years ago by
Julie Zhu
★ 4.3k • written 6.1 years ago by
Levi Waldron
★ 1.1k
5
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3.7k
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News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 9.0 years ago by
thomas.ingraham
▴ 10 • written 9.0 years ago by
Wolfgang Huber
★ 13k
5
votes
7
replies
1.8k
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News:
Updated support site
news
News
10.4 years ago
Martin Morgan
25k
5
votes
5
replies
2.5k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
8.0 years ago
Thomas Maurel
▴ 800
5
votes
1
reply
1.5k
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 16 months ago by
shepherl
4.1k
5
votes
0
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2.3k
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News:
edX online course introducing Bioconductor now up and running
annotation
bioconductor
News
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Vincent J. Carey, Jr.
6.7k
5
votes
1
reply
1.9k
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News:
Bioc2015 conference ongoing now.
bioconductor
conference
News
9.7 years ago
Sean Davis
21k
5
votes
0
replies
6.7k
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News:
Bioconductor Package Archives
bioconductor
archive
news
News
7.4 years ago
Valerie Obenchain
★ 6.8k
5
votes
2
replies
3.1k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 9.7 years ago by
Sonali Arora
▴ 390 • written 9.7 years ago by
Thomas Maurel
▴ 800
5
votes
5
replies
3.5k
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News:
Invitation to submit articles to the Bioconductor gateway on F1000Research
publication
News
7.0 years ago
Sean Davis
21k
5
votes
0
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2.5k
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News:
Join the Bioconductor Community Advisory Board
bioconductoroversight
community
CAB
3.1 years ago
shepherl
4.1k
533 results • Page
1 of 11
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Replies
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
by
James W. MacDonald
68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column
by
Erika
• 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping
by
James W. MacDonald
68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question?
by
DavideSant
• 0
Thank you, this was super useful!
Comment: Error in retrieving clinical data
by
silickas
• 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Votes
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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