0
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9
replies
2.9k
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Error 'names' attribute must be the same length as the vector xcms
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5.7 years ago goh • 0
0
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9
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2.6k
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mapping FASTQ files to single gene (fluorescent reporter)
rsubread alignment align
5.4 years ago A ▴ 40
1
vote
9
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2.5k
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errors in namespaceExports during biocLite installs
biocinstaller installation
9.1 years ago shabbychef • 0
2
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9
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Multiple alignments (multi-mapped reads) and DESeq/edgeR pipeline
deseq deseq2 edger tophat bowtie
8.9 years ago ysdel ▴ 40
3
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9
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3.7k
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champ.runCombat is failing: "invalid 'row.names' length"
champ
5.7 years ago Gurkenkönig ▴ 10
1
vote
9
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2.4k
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Handling DNA sequence loaded from a file
r biostrings DNAsequence
updated 22 months ago by 65k • written 8.1 years ago by ▴ 260
0
votes
9
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1.8k
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RforProteomics workflow troubleshooting
proteomics
7.9 years ago yockpingchow • 0
2
votes
9
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2.1k
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STRINGdb images very low quality?
STRINGdb
updated 2.3 years ago by ▴ 80 • written 2.4 years ago by ▴ 30
0
votes
9
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2.2k
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problem using >3 clusters with Quasr
quasr parallel
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 90
3
votes
9
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2.3k
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problem for finding soft thresholding in WGCNA algorithm
wgcna abline function Scale independence diagram
5.6 years ago modarzi ▴ 10
0
votes
9
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1.4k
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AnnotationHub: failed to load resource name
DFP
2.8 years ago hxwanghxw • 0
0
votes
9
replies
2.3k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
7.5 years ago Maximilian ▴ 10
1
vote
9
replies
2.5k
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Removing batch effects from microarray data based on only a subset of samples
limma removebatcheffect() ComBat microarray
6.3 years ago jaro.slamecka ▴ 140
0
votes
8
replies
2.1k
views
DEXSeqHTML Output Trouble
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8.1 years ago skasowitz • 0
0
votes
8
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3.3k
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featureCounts Returns 0.0% successfully assigned fragments
rsubread featurecounts
5.9 years ago connor.geraghty • 0
0
votes
8
replies
1.1k
views
Question on bgzf_read error
diffbind
4.5 years ago Kath • 0
2
votes
8
replies
2.4k
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Reading HDF5 Files In The Cloud
Rhdf5lib rhdf5
3.2 years ago • updated 8 months ago Thomas Sandmann ▴ 90
1
vote
8
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1.2k
views
Can't install 'pqsfinder'
pqsfinder
5.2 years ago aabarnes2 • 0
3
votes
8
replies
2.6k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData AnnotationForge
2.0 years ago Saber_J ▴ 10
3
votes
8
replies
1.3k
views
please someone help me to run this code
software error R
8.3 years ago Angel ▴ 40
0
votes
8
replies
2.6k
views
Usecase_AnnotationHub_GRanges.Rmd, genes = qhs[[1]] can't download UCSC 'refGene'. - Window 7, R 3.2.1, RStudio 0.99.484
annotationhub bioconductor for genomic data science
8.7 years ago J.C. SUN • 0
1
vote
8
replies
3.2k
views
Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't have a valid EOF block.
Rsubread
2.5 years ago v.merino.nicolas ▴ 10
7
votes
8
replies
3.7k
views
R failing to load genome files from EnsDb.Hsapiens.v86
tximport ensembldb EnsDB.hsapiens.v86
updated 5.3 years ago by 0 • written 5.5 years ago by ▴ 20
2
votes
8
replies
4.9k
views
GDCquery_Maf error
TCGAbiolinks GDCquery_Maf
updated 21 months ago by • 0 • written 2.1 years ago by • 0
1
vote
8
replies
2.2k
views
ReactomePA gsePathway - a couple of questions regarding the input and output
reactomepa
7.1 years ago juls • 0
0
votes
8
replies
1.1k
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Question about Diffbind counts
DiffBind
16 months ago • updated 15 months ago slrpatty • 0
2
votes
8
replies
1.6k
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lpsymphony install on Ubuntu
lpsymphony
7.2 years ago Michael Love 41k
0
votes
8
replies
1.9k
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Error, could not find function"file.edit", the install problem
illuminaHumanv2.db
4.9 years ago JXG1819 • 0
0
votes
8
replies
333
views
DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 8 days ago by ★ 1.3k • written 10 days ago by • 0
2
votes
8
replies
1.9k
views
Error: se does not inherit from class SummarizedExperiment
DEP SummarizedExperiment
4.8 years ago Wuschel ▴ 10
2
votes
8
replies
933
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Reason for NA in table after beta regression?
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3.8 years ago akhaira • 0
2
votes
8
replies
1.7k
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GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
6.0 years ago GENOMIC_region • 0
2
votes
8
replies
2.5k
views
biomaRt : No lock file for BiocFileCache
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updated 2.1 years ago by 25k • written 2.1 years ago by ▴ 50
0
votes
8
replies
1.5k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.2 years ago alipka ▴ 10
3
votes
8
replies
26k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
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8.5 years ago svlachavas ▴ 830
0
votes
8
replies
1.6k
views
DropletUtils::read10xCounts error
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15 months ago fdumetz • 0
10
votes
8
replies
3.0k
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Best alternative annotation package to BiomaRt
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4.8 years ago m93 ▴ 10
0
votes
8
replies
1.9k
views
error in RnBeads installation
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2.2 years ago • updated 2.1 years ago Jitendra ▴ 10
0
votes
8
replies
1.1k
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Failed to read SDRF
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4.2 years ago Ed Siefker ▴ 230
0
votes
7
replies
2.3k
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makeTxDbFromGFF yields an empty TxDb
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8.5 years ago José Luis Lavín ▴ 10
0
votes
7
replies
1.9k
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GO.db installation problems with BiocManager in R
R Bioconductor
5.1 years ago d.m.j.thorburn • 0
1
vote
7
replies
2.6k
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bplapply() fails when BPPARAM = SnowParam() is specified
biocparallel
9.5 years ago jessica.hekman ▴ 40
1
vote
7
replies
1.4k
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query regarding error in installation of "goseq" R bioconductor package
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updated 17 months ago by 3.9k • written 17 months ago by • 0
0
votes
7
replies
1.4k
views
Centos 7.8, custom-compiled R-4.1: iPath_1.0.0 won't install
error iPath R compilation
2.3 years ago wjb2130 • 0
0
votes
7
replies
1.8k
views
Problem with fgsea
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updated 2.1 years ago by ▴ 260 • written 2.1 years ago by • 0
0
votes
7
replies
1.5k
views
Problem using load_raw() function in crossmeta R package
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3.2 years ago michael.s • 0
0
votes
7
replies
1.8k
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Error in loading rsbml
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7.9 years ago enrico.moiso • 0
2
votes
7
replies
2.7k
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DESeq(): Forking of R Process even though parallel=FALSE
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updated 7.6 years ago by 41k • written 7.6 years ago by • 0
0
votes
7
replies
3.1k
views
Mouse GSEA Analysis
clusterProfiler
updated 17 months ago by 41k • written 18 months ago by • 0
1
vote
7
replies
2.2k
views
Error with slingshot slingPseudotime and slingCurveWeights after using fitGAM from tradeSeq
tradeSeq slingshot
21 months ago manduchi ▴ 10
1,000 results • Page 2 of 20
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Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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