Bioconductor 450k

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590

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450K blockfinder cpgCollapse minfi

21 months ago edward.esiribloom • 0

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2.1k

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RGset combinearrays 450k minfi

updated 3.4 years ago by James W. MacDonald 67k • written 3.4 years ago by Sophie Marion de Proce • 0

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893

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methylumi 450k methylation methylome

4.9 years ago A ▴ 40

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11k

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minfi 450k

updated 21 months ago by Sin • 0 • written 5.4 years ago by jshouse ▴ 10

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minfi 450k EPIC analysis

updated 5.3 years ago by James W. MacDonald 67k • written 5.3 years ago by maduran • 0

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450k EPIC minfi limma cell components

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.5 years ago by antgomo • 0

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450K minfi

updated 5.8 years ago by laurenz.holcik • 0 • written 5.8 years ago by lalchungnungabt17 • 0

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1.7k

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450K CSV normalization minfi ChAMP

updated 6.5 years ago by Yuan Tian ▴ 290 • written 6.5 years ago by Simone ▴ 190

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1.2k

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conumee CNV 450K

6.9 years ago bird.of.clockwise • 0

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champ champs.svd() 450K illimina 450k methylation champ 2.8.9

7.2 years ago david.ch • 0

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minfi 450k

7.6 years ago igor ▴ 50

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4.8k

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minfi bumphunter 450k region

updated 8.0 years ago by Dimitris Polychronopoulos ▴ 80 • written 8.8 years ago by cardenasca ▴ 40

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champ methylation 450k

8.1 years ago • updated 8.0 years ago hrishi27n ▴ 20

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minfi methylation 450k

8.1 years ago moonkinwen • 0

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minfi 450k flowsorted.blood.450k

updated 8.1 years ago by Habil Zare ▴ 200 • written 8.7 years ago by cardenasca ▴ 40

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epigenetics EPIC 450K ChAMP News

8.2 years ago Yuan Tian ▴ 90

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2.2k

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champ methylation 450k SVD EPIC News

8.3 years ago Yuan Tian ▴ 90

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limma covariates 450k

8.7 years ago AST ▴ 60

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minfi 450k champ rnbeads

updated 8.7 years ago by James W. MacDonald 67k • written 8.8 years ago by AST ▴ 60

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methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis

updated 8.8 years ago by Peter Hickey ▴ 740 • written 8.8 years ago by Ahdee ▴ 50

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1.6k

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Illumina 450k ChAMP paired test

8.9 years ago walter_teng • 0

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1.4k

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methylation 450k

8.9 years ago Pablo marin-garcia ▴ 90

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1.5k

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illumina 450k motifs meme

8.9 years ago Gustavo Fernández Bayón ▴ 440

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6.8k

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sva combat 450k

8.9 years ago ben.run974 • 0

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minfi 450k illuminahumanmethylation450k.db normalization

updated 9.0 years ago by James W. MacDonald 67k • written 9.0 years ago by b.tawk • 0

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minfi 450k

updated 9.2 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.2 years ago by CC ▴ 10

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microarray champ 450k

updated 9.2 years ago by champ450k • 0 • written 9.2 years ago by CC ▴ 10

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minfi champ illumina 450k

9.3 years ago jeroen • 0

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minfi watermelon cancer 450k normalization

updated 9.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.4 years ago by metamaden ▴ 10

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limma 450k

updated 9.5 years ago by Aaron Lun ★ 28k • written 9.5 years ago by andrew.j.skelton73 ▴ 370

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1.9k

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limma GSA confounding within-pair analysis 450k

9.7 years ago Aileen Bahl ▴ 10

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4.5k

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methyAnalysis methyanalysis 450k

updated 9.8 years ago by Pan Du ▴ 80 • written 9.8 years ago by andrew.j.skelton73 ▴ 370

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goseq 450k enrichment

updated 9.8 years ago by belinda.phipson ▴ 40 • written 9.8 years ago by Ed Schwalbe ▴ 10

33 results • Page 1 of 1

Recent ...

Replies

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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