Showing : Bioinformatics • reset
3
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8
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1.8k
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Problem with readFast5Summary in IONiseR related to HDF5
ioniser bioinformatics minion
updated 6.6 years ago by ▴ 380 • written 7.1 years ago by • 0
3
votes
7
replies
2.5k
views
How to convert bia file to tsv file
samtools bioinformatics
9.0 years ago • updated 8.9 years ago engr.yahya602 • 0
1
vote
6
replies
2.8k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 14 months ago by 41k • written 5.4 years ago by • 0
3
votes
6
replies
1.9k
views
Analyzing Open source PPI databases
ppi bioinformatics
updated 8.7 years ago by 25k • written 8.7 years ago by ▴ 10
3
votes
6
replies
1.9k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 20
1
vote
5
replies
3.2k
views
How to convert a bam file into tsv file format?
bioinformatics
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
2
votes
5
replies
1.6k
views
Differential Gene Expression
deseq2 bioinformatics rna-seq Tutorial
updated 7.6 years ago by 41k • written 7.6 years ago by ▴ 10
3
votes
4
replies
981
views
edgeR analysis of cells treated with either drug1, drug2, or a time matched control at two different time points, did I set this up correctly?
edger rnaseq gene expression bioinformatics
updated 5.7 years ago by 50k • written 5.7 years ago by • 0
2
votes
4
replies
3.8k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 11 weeks ago by 50k • written 4.8 years ago by • 0
1
vote
3
replies
2.1k
views
Gene Ontology and Gene Set Enrichment
rna-seq bioinformatics gene ontology gene set enrichment go
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by ▴ 10
0
votes
3
replies
1.5k
views
How to extract / pull out each row(a.k.a, single genome interval ) from given bed files by row by row for meta analysis?
r bioinformatics peakset
updated 13 months ago by • 0 • written 8.3 years ago by ▴ 80
2
votes
2
replies
973
views
Help for Research Proposal
drug development pathways bioinformatics
updated 5.4 years ago by ★ 13k • written 5.4 years ago by • 0
0
votes
2
replies
5.1k
views
Converting Fastq to Fasta in R
R Bioinformatics Fastq Fasta
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
0
votes
2
replies
2.4k
views
Job: Bioinformatics Research Associate, University of Adelaide
job Job australia bioinformatician job bioinformatics
written 8.9 years ago by ▴ 170
2
votes
2
replies
1.2k
views
How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
1
vote
2
replies
958
views
Results Goana after edgeR pipeline
EdgeR Bioinformatics Goana
2.7 years ago Barista • 0
1
vote
2
replies
1.4k
views
How do i perform chi square test in r?
microarray chisquare bioconductor bioinformatics
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 10
0
votes
2
replies
3.1k
views
AffyMetrix CEL file; data is already transformed too log2
affy microarray bioinformatics
9.2 years ago kanacska ▴ 10
1
vote
2
replies
1.3k
views
Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
2.7 years ago Barista • 0
1
vote
2
replies
2.5k
views
topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology gene set enrichment rna-seq bioinformatics
updated 7.3 years ago by ▴ 730 • written 7.6 years ago by ▴ 10
4
votes
2
replies
1.2k
views
seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
bioinformatics paper multiple treatments biologicalreplicates
updated 7.8 years ago by 50k • written 7.8 years ago by ▴ 80
0
votes
2
replies
844
views
Microbiome 16S amplicon analysis in dada2
bioinformatics DADA2
20 months ago anasjamshed1994 • 0
1
vote
2
replies
2.3k
views
Job: Postdoctoral Research Fellow in Bioinformatics – Systems Biology of Childhood Cancer
bioinformatics systemsbiology cancer job austria Job
8.9 years ago • updated 8.7 years ago heinrich.kovar ▴ 10
0
votes
2
replies
1.9k
views
Job: Postdoc bioinformatics in proteomics
proteomics job bioinformatics Netherlands Job
8.9 years ago b.nota ▴ 360
0
votes
2
replies
2.5k
views
Error in CummeRbund installation
cummerbund rnaseq bioinformatics bioconductor R
updated 9.0 years ago by 65k • written 9.0 years ago by • 0
0
votes
2
replies
750
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 17 months ago by • 0
1
vote
1
reply
1.2k
views
News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
5.6 years ago laurent.albou • 0
1
vote
1
reply
5.5k
views
Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz clustering bioinformatics proteomics timecourse
updated 8.2 years ago by 1.6k • written 8.2 years ago by • 0
0
votes
1
reply
1.2k
views
News: Exploiting computational immunology to understand the immune system| Symposium
computational biology immunology bioinformatics symposium RIMLS News
updated 7.3 years ago by • 0 • written 7.4 years ago by • 0
0
votes
1
reply
1.6k
views
Job: Bioinformatics Post-Doc Positions
cancer BIOINFORMATICS genomics RNAseq miRseq Job
9.2 years ago aaron • 0
0
votes
1
reply
654
views
Job: Job:Data Scientist / Bioinformatician / Statistician at University of California San Francisco (UCSF)
programming datascientist psychiatry bioinformatics JobPosting
6 months ago Belinda • 0
1
vote
1
reply
1.2k
views
FPKM normalization questions!
r fpkm bioinformatics
updated 7.6 years ago by ★ 28k • written 7.6 years ago by ▴ 10
0
votes
1
reply
1.6k
views
In DESeq2, why LRT result's LFC doesn't match with any of Wald test result's LFC?
deseq2 bioinformatics
updated 7.6 years ago by 41k • written 7.6 years ago by • 0
0
votes
1
reply
870
views
WGCNA tree creation
bioinformatics R
5.6 years ago anjanaram1 ▴ 10
0
votes
1
reply
821
views
Counting the number of paralogues for mouse genes gives me the wrong frequency
R bioconductor biomart bioinformatics
6.3 years ago Jack • 0
0
votes
1
reply
1.6k
views
Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 5.9 years ago by 25k • written 5.9 years ago by • 0
1
vote
1
reply
1.7k
views
News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
updated 7.8 years ago by • 0 • written 7.9 years ago by ▴ 10
0
votes
1
reply
1.2k
views
surrogate variable analysis using R package "sva"
sva r bioinformatics
updated 7.6 years ago by ▴ 760 • written 7.6 years ago by ▴ 10
1
vote
1
reply
1.3k
views
Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
bioinformatics proteomics mass spectrometry job Job
6.9 years ago • updated 6.8 years ago Laurent Gatto 1.6k
0
votes
0
replies
1.4k
views
Job: Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
postdoc bioinformatics network analysis australia systemsbiology Job
8.0 years ago david.lynn • 0
0
votes
0
replies
1.6k
views
Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.2 years ago Hui Sun Leong ▴ 10
0
votes
0
replies
2.2k
views
Job: PhD Positions in Helsinki
bioinformatics job Helsinki Finland Job
8.2 years ago Simon Anders ★ 3.7k
0
votes
0
replies
2.4k
views
Job: Full position as Bioinformatician at ETH Zurich in Personalized Medicine Data Fusion and Method Implementation
bioinformatics personalized medicine genomics Job
9.6 years ago Daniel Stekhoven ▴ 10
0
votes
0
replies
2.0k
views
Job: Postdocs and PhD students in the areas of Bioinformatics, Biostatistics or Medical Informatics
jobs job bioinformatics R Job
8.4 years ago Frank Kramer ▴ 60
1
vote
0
replies
1.3k
views
Job: FIMM-EMBL International PhD program now accepting applications
bioinformatics molecular medicine PhD Job
7.3 years ago gretchen.repasky ▴ 20
0
votes
0
replies
1.4k
views
Job: Data Scientist, Mount Sinai School of Medicine, New York, NY USA
job postdoctoral fellow computational biology bioinformatics new york Job
7.5 years ago supindab ▴ 10
1
vote
0
replies
1.7k
views
Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.5 years ago Yassen Assenov ▴ 10
0
votes
0
replies
1.5k
views
Job: Faculty Position in Computational Systems Biology at UC Riverside
systemsbiology bioinformatics position Job
9.6 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
2.1k
views
Job: Bioinformatician - The Ragon Institute of MGH, MIT and Harvard
bioinformatician job bioinformatics immunology HIV Job
7.4 years ago • updated 7.1 years ago Ragon Institute of MGH, MIT and Harvard • 0
0
votes
0
replies
1.2k
views
Job: PhD Position in Bioinformatics
bioinformatics protein variantannotation data integration Job
7.5 years ago stephan.pabinger • 0
50 results • Page 1 of 1
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent and testing the results should be done with `all.equal(…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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