Showing : ENSEMBL • reset
0
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The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart ensembl R Bioconductor
6.3 years ago lbuo • 0
0
votes
4
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1.9k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 6.3 years ago by ★ 6.6k • written 6.3 years ago by • 0
3
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2
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1.6k
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart geo software error ensembl
updated 6.3 years ago by ★ 6.6k • written 6.3 years ago by ▴ 10
1
vote
1
reply
1.6k
views
Gene biotype for a given symbol
ensembl
updated 6.3 years ago by ★ 2.1k • written 6.3 years ago by • 0
1
vote
3
replies
2.0k
views
Scan error using biomart getBM with version option and host set
biomart ensembl getbm
6.4 years ago Marc Saric ▴ 70
2
votes
0
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1.3k
views
News: ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
updated 6.4 years ago by • 0 • written 6.4 years ago by 4.2k
8
votes
5
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7.3k
views
biomaRt Ensembl gene ID to multiple HGNC symbol
ensembl symbol hgnc biomart
updated 6.4 years ago by 68k • written 6.4 years ago by ▴ 100
0
votes
0
replies
926
views
News: Ensembl 96 has been released
ensembl biomart biomaRt e96 news News
6.5 years ago amonida ▴ 20
4
votes
5
replies
2.2k
views
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment
updated 6.5 years ago by 68k • written 6.5 years ago by ▴ 10
0
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0
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1.3k
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News: ensembl 95 gtfs and fasta twobits have been added to AnnotationHub
annotationhub annotationdata ensembl gtf 2bit News
6.6 years ago shepherl 4.2k
0
votes
1
reply
1.0k
views
News: Ensembl 95 has been released
ensembl biomart biomaRt e95 News
6.7 years ago Thomas Maurel ▴ 800
2
votes
4
replies
2.5k
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
updated 2.5 years ago by ▴ 10 • written 6.8 years ago by • 0
2
votes
1
reply
2.1k
views
Ensemble and Entrez disconnected?
ensembl entrez biomart org.hs.eg.db
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
0
votes
1
reply
1.4k
views
Pick coding vs non-coding from Ensembl data set
R ensembl ensembldb noncoding rna protein coding
updated 6.9 years ago by ★ 2.1k • written 6.9 years ago by • 0
3
votes
6
replies
3.3k
views
biomaRt: Ensembl -> Entrez conversion error?
biomart entrez gene identifiers ensembl conversion
updated 6.9 years ago by ★ 6.6k • written 6.9 years ago by ▴ 10
0
votes
3
replies
2.8k
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2 gene symbol ensembl
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 10
2
votes
3
replies
2.0k
views
Problem for finding "Locus Link ID" from Annotation file
wgcna package TCGA LocusLinkID genecode ensembl
updated 7.0 years ago by 68k • written 7.0 years ago by ▴ 10
1
vote
7
replies
1.4k
views
News: ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
7.0 years ago shepherl 4.2k
1
vote
1
reply
1.0k
views
News: Ensembl 94 has been released
biomart release ensembl ensembl94 ensemblmart News
7.0 years ago Thomas Maurel ▴ 800
2
votes
2
replies
2.2k
views
BiomaRt returns 0 obs
biomart getbm ensembl
updated 7.1 years ago by 68k • written 7.1 years ago by • 0
2
votes
2
replies
1.5k
views
Ensembl sheep dataset in biomaRt
ensembl biomart oaries
updated 7.2 years ago by ★ 6.6k • written 7.2 years ago by • 0
2
votes
2
replies
3.2k
views
BioMart missing IDs
biomart ensembl entrez gene identifiers
updated 7.2 years ago by 68k • written 7.2 years ago by ▴ 30
0
votes
0
replies
1.2k
views
News: ensembl 93 gtfs and fasta twobits have been added to AnnotationHub
annotationhub ensembl gtf 2bit annotationdata News
7.2 years ago shepherl 4.2k
1
vote
1
reply
1.5k
views
biomaRt getBM() function does not recognize gene ID character vector values generated from csv file for annotation
biomart getBM() csv files annotation ensembl
updated 7.3 years ago by ★ 6.6k • written 7.3 years ago by ▴ 10
3
votes
6
replies
4.2k
views
Problem with annotating ENSEMBLE IDs to GENE SYMBOL with AnnotationDBI mapIDs
annotation ensembl annotationdbi
7.3 years ago vd4mmind • 0
1
vote
4
replies
4.8k
views
ensembl not working...?
ensembl biomart
7.5 years ago JoeMG • 0
0
votes
0
replies
1.3k
views
News: ensembl 92 gtfs and fasta twobits have been added to AnnotationHub
ensembl gtf 2bit annotationhub News
7.5 years ago shepherl 4.2k
0
votes
0
replies
1.1k
views
News: Ensembl 92 has been released
biomart ensembl release ensembl92 News
7.5 years ago Thomas Maurel ▴ 800
0
votes
2
replies
1.2k
views
Chromosme Name: "CHR_HSCHR19..."
biomart ensembl grch38
7.6 years ago rbenel ▴ 50
0
votes
1
reply
1.2k
views
Problem retrieving data from "ENSEMBL_MART_SNP" database
biomart ensembl
7.6 years ago AROA SUÁREZ VEGA ▴ 20
0
votes
6
replies
2.1k
views
How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq methylation ensembl ucsc limma
7.6 years ago dusan.petrovic • 0
0
votes
4
replies
2.4k
views
biomaRT getBM error
biomart getbm ensembl
updated 7.6 years ago by ★ 6.6k • written 7.6 years ago by • 0
0
votes
3
replies
2.5k
views
How to produce a dataframe with unique ENTREZID to use in gage?
gage annotationdbi entrez ensembl
7.6 years ago colaneri ▴ 30
6
votes
11
replies
4.3k
views
ensembldb from M.musculus NCBI37 v67 gtf
ensembldb NCBI37 v67 ensembl
7.7 years ago • updated 7.6 years ago floriandeckert ▴ 30
0
votes
1
reply
2.2k
views
Scan issue retrieving Drosophila Genes with biomaRt
R biomart drosophila melanogaster ensembl
updated 7.7 years ago by ★ 6.6k • written 7.7 years ago by • 0
0
votes
1
reply
1.6k
views
how to set boolean filter
biomart ensembl boolean filter
7.7 years ago shenwei1376 • 0
19
votes
7
replies
15k
views
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
deseq2 ensembl
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 170
1
vote
3
replies
1.8k
views
biomaRT biotype TFs only
biomart TF biotype ensembl mus musculus
updated 7.7 years ago by ★ 6.6k • written 7.7 years ago by ▴ 60
1
vote
1
reply
1.5k
views
Ensembl transcripts returned by getBM not matching the biomart website
ensembl transcripts getbm biomart
7.7 years ago hihi.joshi • 0
0
votes
5
replies
3.1k
views
getBM in loop
biomart ensembl curl
updated 7.8 years ago by ★ 6.6k • written 7.8 years ago by ▴ 40
1
vote
0
replies
1.6k
views
News: Ensembl 91 EnsDb databases added to AnnotationHub
annotation ensembldb ensembl News
7.8 years ago Johannes Rainer ★ 2.1k
1
vote
0
replies
1.7k
views
News: ensembl 91 gtfs and fasta twobits have been added to AnnotationHub
annotationhub ensembl gtf 2bit News
7.8 years ago shepherl 4.2k
0
votes
6
replies
2.0k
views
ENSEMBL causing issues replicating previous results
R ENSEMBL topGO
7.8 years ago snguyen268 • 0
8
votes
8
replies
4.0k
views
biomaRt: drerio_gene_ensembl dataset missing
biomart ensembl ripseeker
updated 7.8 years ago by ★ 6.6k • written 7.8 years ago by ▴ 510
2
votes
1
reply
1.8k
views
News: Ensembl 91 is out!
ensembl biomart release ensembl91 News
7.8 years ago amonida ▴ 20
1
vote
2
replies
1.6k
views
get_gene_transcript_exon_tables.pl extremely slow
ensembl ensembldb
updated 7.9 years ago by ★ 2.1k • written 7.9 years ago by ▴ 230
1
vote
0
replies
1.5k
views
News: ensembl 90 ensembldb EnsDb databases have been added to AnnotationHub
ensemblb ensembl AnnotationHub annotation News
8.1 years ago Johannes Rainer ★ 2.1k
1
vote
1
reply
1.5k
views
News: Ensembl 90 has been released
ensembl biomart ensembl90 release News
8.1 years ago Thomas Maurel ▴ 800
2
votes
1
reply
4.1k
views
biomaRt: list of hosts accessed
biomart ensembl
updated 8.2 years ago by ★ 6.6k • written 8.2 years ago by ▴ 10
2
votes
6
replies
2.8k
views
biomaRt Ensembl ID query returns NA in 'ensembl_gene_id', 'ensembl_transcript_id', etc.
biomart ensembl annotation
updated 8.2 years ago by ★ 6.6k • written 8.2 years ago by ▴ 30
141 results • Page 2 of 3
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I got it working , thank you!!!
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Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
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