Showing : GO.DB • reset
3
votes
1
reply
1.4k
views
Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 8 months ago by ★ 4.1k • written 8 months ago by ▴ 10
2
votes
5
replies
720
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 10 months ago by 68k • written 10 months ago by • 0
2
votes
17
replies
3.1k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 14 months ago by ▴ 760 • written 14 months ago by ▴ 50
0
votes
8
replies
1.4k
views
GOslim missing GO term
GO.db GOslim
15 months ago amanda • 0
0
votes
1
reply
710
views
Which species does GO.db use
GO.db annotationTools
updated 20 months ago by ▴ 760 • written 20 months ago by • 0
0
votes
0
replies
656
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
21 months ago RuBBiT0 ▴ 10
1
vote
0
replies
597
views
Typo in GO.db manual reference
GO.db
23 months ago RuBBiT0 ▴ 10
1
vote
2
replies
1.4k
views
GO.db for Bioconductor 3.17
GO.db devel
2.1 years ago Amanda D. Clark • 0
0
votes
2
replies
2.6k
views
Can't install GO.db
GOexpress GO.db GOSemSim
2.3 years ago Chruut • 0
0
votes
1
reply
937
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 2.4 years ago by ▴ 780 • written 2.5 years ago by • 0
2
votes
1
reply
3.3k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
2.8 years ago Lucía ▴ 30
1
vote
6
replies
1.6k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
votes
1
reply
3.1k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
3.4 years ago Yang • 0
0
votes
1
reply
1.2k
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
1
vote
6
replies
2.7k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 3.5 years ago by • 0 • written 3.5 years ago by ▴ 40
0
votes
1
reply
1.3k
views
ViSEAGO
gene_ontology GOID ViSEAGO GO.db custom2GO
3.7 years ago jabbar_campbell • 0
2
votes
2
replies
1.3k
views
retrieve gene IDs from GO.db GO
GO GO.db
3.9 years ago decppced • 0
1
vote
2
replies
1.1k
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
4.0 years ago MOHAMMAD • 0
2
votes
1
reply
1.1k
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 4.0 years ago by ▴ 780 • written 4.0 years ago by • 0
3
votes
2
replies
2.7k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 4.1 years ago by 25k • written 4.1 years ago by ★ 4.1k
0
votes
4
replies
1.7k
views
GO.db package can't be installed
install GO.db
updated 4.2 years ago by 25k • written 4.2 years ago by • 0
1
vote
1
reply
1.8k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 4.3 years ago by 68k • written 4.3 years ago by • 0
0
votes
4
replies
1.4k
views
topGO "argument is of length zero" error
GO.db topGO
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
0
votes
2
replies
1.7k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 4.7 years ago by 68k • written 4.7 years ago by ★ 2.0k
0
votes
1
reply
2.3k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.8 years ago Jenny Drnevich ★ 2.0k
1
vote
2
replies
2.0k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
0
votes
4
replies
1.7k
views
Error attaching TIN
software error GO.db TIN
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
3
votes
2
replies
1.0k
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.9 years ago by 68k • written 4.9 years ago by ▴ 10
1
vote
4
replies
1.4k
views
Trouble installing package GO.db
GO.db
updated 5.2 years ago by 68k • written 5.2 years ago by ▴ 10
0
votes
1
reply
1.4k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
0
votes
5
replies
5.0k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
2
votes
5
replies
1.3k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
0
votes
5
replies
1.8k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
1
vote
2
replies
1.8k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 6.3 years ago by 25k • written 6.3 years ago by ★ 1.1k
3
votes
3
replies
1.3k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 6.5 years ago by • 0 • written 6.5 years ago by ▴ 10
1
vote
1
reply
1.4k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
2
votes
2
replies
1.7k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
2
votes
2
replies
1.2k
views
Troubles installing GO.db
go.db
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 20
3
votes
8
replies
2.9k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 10
0
votes
1
reply
2.0k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by • 0
0
votes
0
replies
1.4k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
7.0 years ago crafy • 0
0
votes
3
replies
1.4k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
7.0 years ago dusan.petrovic • 0
0
votes
1
reply
2.7k
views
GO.db failure to install
software error go.db
7.1 years ago matt.a.bennett25890 • 0
0
votes
1
reply
1.9k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
votes
1
reply
2.2k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
1
vote
10
replies
3.2k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
0
votes
3
replies
4.8k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
8.1 years ago Sidi.Ma • 0
0
votes
2
replies
1.7k
views
GO.db will not download
GO.db
8.1 years ago MOD • 0
0
votes
1
reply
2.0k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 10
1
vote
5
replies
5.9k
views
can not able to install go.db
go.db
updated 8.3 years ago by 25k • written 8.3 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana by ATpoint ★ 4.7k
Why was my comment removed? It's irritating that it was moderated away without leaving any note.
Answer: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana by James W. MacDonald 68k
Please don't cross-post. You have already asked this on biostars.org, which is the correct venue for general questions like this.
Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by Wolfgang RAFFELSBERGER ▴ 140
Yes, rtools4.4 is installed (and works for making my own packages)
Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by Wolfgang RAFFELSBERGER ▴ 140
Thank you, this solved the problem !
Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by ATpoint ★ 4.7k
I cannot reproduce this on Windows 11. Is rtools installed to allow compilation from source on Windows?
Votes
Comment: Identifying potentially associated gene set to drug response using GSVA
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Awards • All
Popular Question to Hervé Pagès 16k
Scholar to Michael Love 43k
Scholar to James W. MacDonald 68k
Popular Question to Wolfgang RAFFELSBERGER ▴ 140
Popular Question to igor ▴ 50
Locations • All
United States, 3 minutes ago
United States, 12 minutes ago
United States, 15 minutes ago
United States, 17 minutes ago
Seattle, WA, United States, 18 minutes ago
Traffic: 935 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6