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Detect short tandem repetitions from bam file
bam short tandem repetitions package
8.6 years ago • updated 8.5 years ago Pau Marc Muñoz Torres ▴ 20
9
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6
replies
1.7k
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package specifically dedicated to a manuscript
package guidelines
9.3 years ago petyuk ▴ 70
1
vote
3
replies
981
views
new submission : waiting duration
package
9.4 years ago kmezhoud ▴ 10
1
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6
replies
2.9k
views
how to create a NEWS file in R package
news package
updated 5.8 years ago by • 0 • written 5.8 years ago by • 0
1
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3
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1.9k
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question about the EdgeR package: additive models and blocking
package
updated 9.1 years ago by 50k • written 9.1 years ago by ▴ 100
1
vote
7
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1.8k
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Ballgown object construction error
ballgown scan error package
6.9 years ago spaque57 • 0
3
votes
3
replies
1.4k
views
Repeated error loading DESqe2 - package xxx not found
deseq2 package software error
updated 4.2 years ago by 25k • written 4.2 years ago by • 0
2
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3
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2.8k
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package for sex determination using sam/bam files
software sex package
8.6 years ago Pau Marc Muñoz Torres ▴ 20
0
votes
3
replies
2.9k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb
22 months ago elmfinds • 0
2
votes
4
replies
1.2k
views
Bioconductor package development
package R software development
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
1
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2
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1.0k
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Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq r package
updated 6.0 years ago by • 0 • written 6.0 years ago by ▴ 140
4
votes
3
replies
2.8k
views
Is there an R package providing an R API for IGV / igvtools out there?
package IGV
updated 8.2 years ago by ▴ 470 • written 8.2 years ago by ★ 2.4k
1
vote
2
replies
1.1k
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New package version submission
package submit package package updates
7.9 years ago francescodc87 • 0
2
votes
8
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3.7k
views
Which R version is needed for tximport package?
tximport package R version install tximport
3.7 years ago harelarik ▴ 60
0
votes
2
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3.9k
views
package ‘ComplexHeatmap’ is not available
software error package
updated 9.1 years ago by ★ 1.2k • written 9.1 years ago by • 0
2
votes
7
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4.7k
views
Installing Local packages in Bioconductor
package
updated 8 months ago by • 0 • written 2.0 years ago by • 0
0
votes
8
replies
6.8k
views
not able to install bioconductor packages
package bioconductor new version
7.2 years ago farahqureshi5 • 0
2
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2
replies
6.1k
views
package install issue (ubuntu 14.04, R 3.2.1)
package installation
8.8 years ago doublehelixlf ▴ 10
4
votes
7
replies
1.9k
views
Does Rhtslib currently work on Windows?
Rhtslib htslib package
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 40
1
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2
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1.2k
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How to build a non "gene-centered" annotation package using SQLForge ?
annotation package custom microarray
9.3 years ago becker.jeremie • 0
12
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3
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6.0k
views
Error while uploading Bioconductor packages - R Shiny
shiny package deploy
6.1 years ago lloyd.izard ▴ 80
0
votes
4
replies
938
views
CDF still not found
CDF Package
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
2
votes
5
replies
1.4k
views
Submitting R packages with external data
package
updated 9.3 years ago by ▴ 750 • written 9.3 years ago by • 0
0
votes
3
replies
1.9k
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Affymetrix ReadAffy() can't read my CEL file
microarray affy cancer hgu133plus2 package
updated 9.2 years ago by 65k • written 9.2 years ago by ▴ 10
1
vote
1
reply
9.1k
views
Problems to install a package - Ubuntu
ubuntu package installation varianttools
updated 9.0 years ago by 65k • written 9.0 years ago by • 0
5
votes
3
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1.6k
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BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package bioconductor bioc-devel developers
9.0 years ago flying-sheep ▴ 10
0
votes
1
reply
2.0k
views
Graph viewer for Reactome Pathways
bioconductor package reactome graph
updated 8.9 years ago by ★ 2.0k • written 8.9 years ago by ▴ 10
0
votes
2
replies
850
views
Update a package in a older relase
package
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
0
votes
4
replies
3.6k
views
Biostrings throwing error
biostrings installation package keepNA
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
0
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3
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2.5k
views
DLL maps not found while compiling package in Windows machine
package compilation error dll windows
8.6 years ago Miguel Juliá • 0
0
votes
1
reply
783
views
I want to submit a package to Bioconductor by Github. But it always comes out an inexplicable problems
package
updated 7.9 years ago by 25k • written 7.9 years ago by • 0
0
votes
1
reply
1.3k
views
How to submit a package hosted on Bitbucket
package submission
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 40
0
votes
5
replies
1.6k
views
Using S4Vectors within a package
Package s4vectors
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 10
0
votes
1
reply
1.2k
views
missMethyl package: gsameth bias plots
missmethyl plots bias package
updated 7.2 years ago by ▴ 40 • written 7.2 years ago by • 0
0
votes
1
reply
1.5k
views
Error in installing ReactomePA
R package
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
1
vote
1
reply
1.2k
views
Large example data with Bioconductor package
package
updated 6.5 years ago by 3.9k • written 6.5 years ago by ▴ 30
1
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2
replies
1.1k
views
R packages old versions
R deseq2 package
updated 6.5 years ago by 42k • written 6.5 years ago by • 0
0
votes
1
reply
1.2k
views
Error in export ifelse from IRanges
iranges ifelse package namespace export
updated 6.3 years ago by 65k • written 6.3 years ago by • 0
0
votes
2
replies
2.1k
views
Creating a qPCRset object from a text file
qPCRset object nondetects r package txt
updated 6 months ago by • 0 • written 6.3 years ago by • 0
3
votes
2
replies
934
views
Prevent "New version" message to appear
package
updated 6.3 years ago by 25k • written 6.3 years ago by ▴ 10
1
vote
5
replies
2.1k
views
Tissue Specificity R-package
tissue specificity r package package development
updated 6.2 years ago by ▴ 140 • written 6.2 years ago by ▴ 30
0
votes
2
replies
1.1k
views
News: Final List of Deprecated Packages for Bioc3.7
deprecate package release News
written 6.1 years ago by 3.9k
1
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4
replies
4.6k
views
Unable to install BiocStyle: not available (for R version 3.5.0)
package not available (for R version 3.5.0) BiocStyle
updated 6.0 years ago by ★ 6.5k • written 6.0 years ago by • 0
2
votes
1
reply
943
views
Curated Data Package in Bioconductor
package data
5.7 years ago divyswar01 • 0
1
vote
3
replies
1.3k
views
News: Initial List of Deprecated Package Bioc 3.9
package deprecate release News
updated 5.5 years ago by ★ 13k • written 5.5 years ago by 3.9k
1
vote
2
replies
886
views
Gallus gallus package genome update release
genome novel package release
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
0
votes
1
reply
924
views
Submitting R package in Bioconductor with Plink and vcftools Dependencies
R package dependencies
updated 5.1 years ago by ★ 28k • written 5.1 years ago by • 0
0
votes
1
reply
781
views
Package not found bioconductor gCMAP
microarray cmap package gCMAP gCAMPWeb
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
0
votes
1
reply
1.0k
views
I have installed bioconductor, R still asks me to install it
bioconductor biocLite GEOquery package
updated 4.3 years ago by ★ 13k • written 4.3 years ago by • 0
0
votes
2
replies
887
views
Confusion error from automated checks for package submission
package submiss Submission
updated 3.0 years ago by 16k • written 3.0 years ago by • 0
50 results • Page 1 of 1
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Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by nbay13 • 0
A little late to the party, but I found that using the equation you specified, the p-values are actually slightly off from base R's `t.test…
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
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