Showing : R • reset
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576
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plotting gene expression correlation and gene distance
R
8.3 years ago safy_abaza • 0
0
votes
1
reply
2.2k
views
How to get treatment information with TCGAbiolinks?
gdcprepare tcgabiolinks treatment_type R data extraction
updated 8.3 years ago by ★ 1.6k • written 8.3 years ago by • 0
0
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0
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1.0k
views
How to use clusterprofiler
R
8.3 years ago nakanomasayuki265 • 0
0
votes
1
reply
1.5k
views
Visualizing Linear Model Coefficients in R
R deseq2 graph linear model
updated 8.3 years ago by 43k • written 8.3 years ago by • 0
0
votes
6
replies
2.5k
views
MeDIPS: warning when using "ttest" settings in MEDIPS.meth
R medips medip-seq
9.2 years ago • updated 8.3 years ago stb • 0
1
vote
1
reply
5.5k
views
MA plot in R
rstudio r plotMA
8.3 years ago g.k • 0
0
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0
replies
1.3k
views
obtain from the gene names from heat map.2
R
8.3 years ago nakanomasayuki265 • 0
1
vote
4
replies
2.1k
views
TarSeqQC TargetExperiment() Error- failed to stop SOCKcluster cluster-error writing to connection
TarSeqQC R ngs biocparallel
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 10
0
votes
1
reply
1.1k
views
How to extract DEG using limma at threshold value p<0.05 and fold change >1.5 ?
limma microarray R bioconductor
updated 8.3 years ago by ★ 29k • written 8.3 years ago by • 0
1
vote
1
reply
1.1k
views
esearch in reutils package: how to specify dataset?
R
8.3 years ago ezrabekele17 • 0
0
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0
replies
1.1k
views
TCGAbiolinks : TCGAdownload Error in curl
R tcgabiolinks tcgadownload error
8.3 years ago juniuskcc • 0
0
votes
1
reply
1.7k
views
GSEA threshold question
GSEa r clusterprofiler reactomepa
8.3 years ago bhgyu ▴ 30
0
votes
1
reply
754
views
efetch result not in character format
R
updated 8.4 years ago by 68k • written 8.4 years ago by • 0
0
votes
3
replies
2.4k
views
(very) conflicting results with DESeq2 between versions
deseq2 tximport rnaseq kallisto R
updated 8.4 years ago by 43k • written 8.4 years ago by • 0
2
votes
2
replies
1.8k
views
Number of IRanges elements in TCGA HiSeqV2 dataset
r tcga recount iranges
updated 8.4 years ago by ★ 1.1k • written 8.4 years ago by ▴ 20
0
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0
replies
1.2k
views
Use "gating.template" on data.table
data.table opencyto gating csv files R
8.4 years ago Rivka • 0
0
votes
0
replies
1.5k
views
Job: Post-Doc Biostatistics/Bioinformatics for high-dimensional transcriptomic data
bioinformatician/biostatistician position statistical inference high dimensionnal omics R Job
8.4 years ago julie.chevalier • 0
0
votes
3
replies
1.5k
views
Dr. Armin Ahmadvand
R rnaseq
8.4 years ago ahmadvandra • 0
1
vote
1
reply
1.8k
views
Selecting only one transcript in BiomartGeneRegionTrack
gviz gviz-package R
updated 8.4 years ago by ▴ 180 • written 8.4 years ago by • 0
1
vote
1
reply
1.1k
views
Searchseq function in TFBSTools says 'could not find function "unsafe.update"'
R software error
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 10
0
votes
1
reply
2.9k
views
Error in solve.default(t(mod) %*% mod) : Lapack routine dgesv: system is exactly singular: U[4,4] = 0
sva R removebatcheffect
8.4 years ago aina.jene ▴ 10
0
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0
replies
984
views
How to combine CGHcall objects
cghcall r cgh copy number
8.4 years ago kitcurtius • 0
0
votes
3
replies
1.8k
views
TCGA controlled data
R tcgabiolinks gdcprepare
8.4 years ago ugandhar.ch1 • 0
0
votes
1
reply
3.5k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap hclust R dendrogram
8.4 years ago vd4mmind • 0
0
votes
7
replies
2.6k
views
Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 8.4 years ago by ★ 1.1k • written 8.4 years ago by ▴ 30
0
votes
0
replies
762
views
Prediction of terminators in a sequence with R
r
8.4 years ago g.nocchi • 0
0
votes
1
reply
1.5k
views
Change DEXSeq plot: Intron length/width and genes from - strand
rnaseq r dexseq visualization
8.4 years ago aleipz • 0
3
votes
9
replies
1.7k
views
Reading Large File in Trunk
R
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 110
2
votes
2
replies
2.6k
views
SVA package - ERROR: nvobj = sva(edata, mod, mod0, n.sv=n.sv)
sva removebatcheffect R
updated 8.4 years ago by ▴ 130 • written 8.4 years ago by ▴ 10
0
votes
0
replies
914
views
DEXSeq : for differential exon usage
DEXSeq R
8.4 years ago gv ▴ 40
0
votes
2
replies
1.9k
views
should i include PCs or MDSs as covariates in methylation study?
limma methylation R covariate MDS
updated 8.4 years ago by ★ 29k • written 8.4 years ago by • 0
0
votes
1
reply
2.4k
views
GAGE or GSEABase using expression data and pathway.gmt file for mouse
R GSEA GAGE pathways
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by • 0
0
votes
14
replies
3.2k
views
Path to file in windows
bioconductor R windows diffbind
updated 8.5 years ago by ▴ 670 • written 8.5 years ago by • 0
0
votes
3
replies
1.2k
views
Regarding Gviz package
annotation bioconductor R gviz
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
0
votes
4
replies
23k
views
DESeq2: How do I compare certain samples that are in two groups and two treatments
deseq2 rnaseq R
8.5 years ago zeynep.nenseth • 0
0
votes
3
replies
1.7k
views
DESeq2::DESeq command hangs at "fitting model and testing" step with no output.
deseq2 R
updated 8.5 years ago by 43k • written 8.5 years ago by • 0
0
votes
1
reply
2.5k
views
error in the plot window of rstudio
R
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
0
votes
1
reply
1.1k
views
Finding DOSE package for R3.3.3
R package installation
updated 8.5 years ago by 16k • written 8.5 years ago by • 0
0
votes
1
reply
1.2k
views
Error in dba.count
R diffbind
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
0
votes
1
reply
681
views
I am trying to plot from a check box for fcs file in a reactive environment
r
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
0
votes
1
reply
2.1k
views
Error in installing ReactomePA
R package
updated 8.5 years ago by 25k • written 8.5 years ago by • 0
0
votes
1
reply
2.1k
views
DESeq2 design formula/experiment table help
rnaseq differential gene expression deseq2 r
updated 8.5 years ago by 43k • written 8.5 years ago by • 0
0
votes
4
replies
2.7k
views
Bioconductor - not updating
bioconductor R bioclite
updated 8.5 years ago by 25k • written 8.5 years ago by • 0
0
votes
2
replies
4.5k
views
Calculate correlation matrix for gene expression data
R differential gene expression
updated 8.5 years ago by • 0 • written 8.5 years ago by • 0
0
votes
0
replies
1.9k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
8.7 years ago • updated 8.5 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.4k
views
Job: Full Time Bioinformatics Software Developer
php javascript rmysql R Job
8.7 years ago • updated 8.5 years ago Luo Weijun ★ 1.6k
1
vote
4
replies
1.2k
views
write.table of posterior probabilities error
R centipede
updated 8.5 years ago by 68k • written 8.5 years ago by ▴ 60
0
votes
2
replies
2.1k
views
Error in GEOquery
geoquery getgeo R
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
5
votes
0
replies
1.7k
views
Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
8.5 years ago Shamith.Samarajiwa ▴ 180
2
votes
7
replies
4.1k
views
Retriving Annotation for HTA2.0 using biomRt
microarray annotation biomart R
updated 8.5 years ago by ▴ 800 • written 8.5 years ago by • 0
1,163 results • Page 16 of 24
Recent ...
Replies
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA by Michael Love 43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k
It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k
R-4.5.1 is compatible with both release and devel versions of Bioconductor. Which one are you using? I am still on release, and it's fine: …
Votes
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
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