Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RStudio
•
reset
3
votes
8
replies
26k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade
Rstudio
Bioconductor
R3.2.2
8.5 years ago
svlachavas
▴ 830
1
vote
3
replies
23k
views
Converting first column to rownames
rstudio
8.2 years ago
John
▴ 30
3
votes
3
replies
16k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
7.6 years ago
Jon Bråte
▴ 250
5
votes
15
replies
11k
views
Can't able to install Seurat in Rstudio
Rstudio
Seurat
updated 2.9 years ago by
Kevin Blighe
★ 3.9k • written 2.9 years ago by
KOUSTAV
• 0
2
votes
1
reply
8.4k
views
Error: status was 'SSL connect error'
bioconductor
proxy
macOS
R
RStudio
updated 4.5 years ago by
Martin Morgan
25k • written 4.5 years ago by
mcall
▴ 20
0
votes
20
replies
6.1k
views
SummarizeOverlaps in R
summarizeoverlaps
Bam
rstudio
updated 8.8 years ago by
Jake
▴ 90 • written 8.8 years ago by
Lillyhchen
▴ 10
9
votes
11
replies
5.8k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 7 weeks ago by
shepherl
3.9k • written 2.3 years ago by
jon.klonowski
▴ 40
2
votes
5
replies
5.5k
views
Update R in Rstudio to specific version 3.2.1 in windows
updateR
rstudio
Rversion3.2.1
updated 8.6 years ago by
Dan Tenenbaum
★ 8.2k • written 8.6 years ago by
svlachavas
▴ 830
1
vote
1
reply
4.9k
views
MA plot in R
rstudio
r
plotMA
6.9 years ago
g.k
• 0
2
votes
1
reply
4.6k
views
Reading fasta file with multiple sequences
multiple sequences
bioconductor
rstudio
seqinr
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Riot
• 0
3
votes
7
replies
4.6k
views
goseq code after DESeq2 -NO IDEA!
goseq
DESEQ2
RSTUDIO
CODE
updated 8.5 years ago by
Steve Lianoglou
★ 13k • written 8.5 years ago by
amyfm
▴ 10
0
votes
14
replies
4.1k
views
GenomeInfoDbData had non-zero exit status
DESeq2
RStudio
GenomeInfoDbData
hadnon-zeroexitstatus
updated 19 months ago by
wshao9
• 0 • written 22 months ago by
JoseR
• 0
1
vote
5
replies
4.0k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw
rtracklayer
http
RStudio
updated 3.4 years ago by
Michael Lawrence
★ 11k • written 3.4 years ago by
Søren
• 0
2
votes
2
replies
3.8k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio
heatmap.2
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
austin.taylor
• 0
0
votes
2
replies
3.6k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
6.5 years ago
clarisbaby
• 0
1
vote
3
replies
3.5k
views
Problem using display() function on RStudio
display
rstudio
annotationhub
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
barashe
▴ 10
2
votes
18
replies
3.2k
views
edgeR: processAmplicons crashes with large number of hairpins
edger
processamplicons
rstudio
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
thomas.leete
• 0
0
votes
4
replies
3.1k
views
Impossible to use goseq package - problem with geneLenDataBase
goseq
geneLenDataBase
bioclite
rstudio
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
amyfm
▴ 10
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.7 years ago
HELEN
• 0
1
vote
7
replies
2.9k
views
Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
3.1 years ago • updated 3.0 years ago
Abby
▴ 10
0
votes
5
replies
2.9k
views
New Version of CummeRbund?
cummerbund
rstudio
8.3 years ago
lreiter
• 0
0
votes
4
replies
2.8k
views
Unable to install Rcpp package for genefo
Rcpp
genefo
linux
linux mint
Rstudio
updated 7.8 years ago by
mfox
• 0 • written 7.8 years ago by
anjali.krishna1008
• 0
1
vote
8
replies
2.7k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2
null
summarizedexperiment
rstudio
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
200dumplings
• 0
0
votes
3
replies
2.6k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio
cummerbund
error
6.9 years ago
mszskb
• 0
0
votes
9
replies
2.4k
views
is AClust package still available?
Aclust
Aclustering
Rstudio
Clusters
updated 8.7 years ago by
Nitish Kumar Mishra
▴ 40 • written 8.8 years ago by
Lillyhchen
▴ 10
0
votes
1
reply
2.3k
views
Upload error in RStudio running on Amazon - AMI
AMI
RStudio
upload error
custom install
updated 9.3 years ago by
Dan Tenenbaum
★ 8.2k • written 9.3 years ago by
nicholas.provart
• 0
0
votes
1
reply
2.2k
views
Unable to Install packages in R
rstudio
updated 2.6 years ago by
James W. MacDonald
65k • written 2.6 years ago by
Fiona
• 0
1
vote
5
replies
2.2k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2
RStudio
2.6 years ago
Sonia
• 0
0
votes
3
replies
2.1k
views
Getting different results with DESeq2
deseq2
results
rstudio
updated 8.8 years ago by
Michael Love
41k • written 8.8 years ago by
Lillyhchen
▴ 10
4
votes
5
replies
2.1k
views
DESeq2::plotPCA plotting error
RStudio
PCA
DESeq2
written 2.0 years ago by
960942
• 0
0
votes
0
replies
2.0k
views
Read Graphviz file .dot in R
r
rstudio
rgraphviz
graphviz
.dot
7.9 years ago
pleaseteachmehowtodoit
• 0
0
votes
1
reply
1.9k
views
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor
rstudio
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
yog312
• 0
0
votes
1
reply
1.9k
views
DeSeq2 installation on ubuntu fails
deseq2
R
ubuntu
bioconductor
rstudio
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
drumarsohail
• 0
3
votes
6
replies
1.8k
views
Integer overflow issue with ChIPQC
ChIPQC
Rstudio
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
Nitesh Kumar Singh
▴ 30
0
votes
2
replies
1.8k
views
Gene symbol annotation not converted for intergenic SNPs with multiple genes
annotation
variantannotation
rstudio
updated 8.2 years ago by
Valerie Obenchain
★ 6.8k • written 8.2 years ago by
noor.suaini
• 0
0
votes
0
replies
1.7k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error
ballgown
rstudio
R
stattest
5.1 years ago
fatimarasool135
• 0
2
votes
4
replies
1.7k
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error
diffbind
rstudio
abort
quit
updated 7.0 years ago by
Gord Brown
▴ 650 • written 7.0 years ago by
msabbag2
• 0
2
votes
4
replies
1.7k
views
make TxDb from list of genes
R
maketxdbfrombiomart
maketxdbfromgranges
rstudio
ensembl
updated 12 months ago by
Shreyash
▴ 10 • written 5.4 years ago by
rtwest
• 0
1
vote
4
replies
1.6k
views
biomaRt scan error for latest assembly when indicating version Number
biomart
rstudio
ensembl mart
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
mullpaul
• 0
0
votes
4
replies
1.6k
views
New computer won't install DESeq2
deseq2
rstudio
install error
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
jyoung
• 0
0
votes
5
replies
1.6k
views
Using RStudio AMI with localhost
RStudio
AWS
AMI
4.8 years ago
bio-explorer
• 0
0
votes
7
replies
1.6k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error
RStudio
ggplot2
DESeq2
updated 5 months ago by
James W. MacDonald
65k • written 6 months ago by
BioES
• 0
0
votes
0
replies
1.6k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
6.6 years ago
Luiz
• 0
0
votes
5
replies
1.5k
views
readTranscriptFeatures from genomation
R
Rstudio
Error
readTranscriptFeatures
genomation
updated 4.5 years ago by
altuna akalin
▴ 20 • written 4.5 years ago by
hwaterma
• 0
0
votes
3
replies
1.5k
views
Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 2.2 years ago by
Sean Davis
21k • written 2.3 years ago by
Jitendra
▴ 10
0
votes
4
replies
1.4k
views
problem in installing flowclust
rstudio
flowclust
updated 6.9 years ago by
shepherl
3.9k • written 6.9 years ago by
shadhiksk
• 0
1
vote
2
replies
1.3k
views
Rstudio session aborts when using read.celfiles()
oligo package
Rstudio
fatal error
microarray
CEL
6.5 years ago
biostR
▴ 10
0
votes
3
replies
1.3k
views
GenomiFeatures is not available for R version 3.2.1
GenomiFeatures
rversion3.2.1
3.0
rstudio
8.6 years ago
serpalma.v
▴ 60
0
votes
0
replies
1.3k
views
Error with R package RontoTools regarding administrator issues downloading updated KEGG data
ROntoTools
Rstudio
bioconductor
administratorIssues
pathway analysis
8.6 years ago
svlachavas
▴ 830
2
votes
4
replies
1.3k
views
R session terminates when trying to load affycoretools package
affycoretools
Rstudio
fatal error
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
biostR
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Locations
• All
France,
21 minutes ago
Sweden,
32 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
Miami, FL,
2 hours ago
Sweden,
2 hours ago
Traffic: 468 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6