Showing : Transcriptomics • reset
0
votes
0
replies
105
views
Job: Postdoctoral fellowships in Spatial Omics and Single Cell Genomics at the University of Padova (IT)
SingleCell Transcriptomics SpatialDatasets SpatialData
18 days ago Silvio • 0
3
votes
2
replies
288
views
How to extract counts from a DESeq dataset ordered by a specific sample?
DESeq2 Transcriptomics
11 weeks ago Anita ▴ 10
3
votes
5
replies
1.6k
views
DESeq2, time-course interpretation
Transcriptomics TimeCourse DESeq2
updated 11 months ago by 42k • written 11 months ago by • 0
0
votes
4
replies
805
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
13 months ago • updated 12 months ago sreeshmaraj72 • 0
0
votes
1
reply
383
views
Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 14 months ago by 42k • written 14 months ago by • 0
4
votes
5
replies
1.9k
views
EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics EnhancedVolcano
updated 14 months ago by ★ 3.9k • written 14 months ago by ▴ 20
4
votes
8
replies
1.4k
views
DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts normalization?
DESeq2 Transcriptomics
updated 14 months ago by ★ 13k • written 14 months ago by ▴ 20
0
votes
3
replies
794
views
Understanding edgeR differential expression results
Transcriptomics edgeR DifferentialExpression RNASeqData RNASeq
updated 15 months ago by 51k • written 15 months ago by • 0
0
votes
1
reply
793
views
Is it possible to convert transcript-level to gene-level dataset to use it in DESeq2 ?
DESeq2 Transcriptomics tximport deseq txi
updated 17 months ago by ★ 1.5k • written 17 months ago by ▴ 10
0
votes
1
reply
1.4k
views
Variance stabilization transformation (VST), blind=TRUE
DESeq2 Transcriptomics RNASeq
updated 17 months ago by 42k • written 17 months ago by • 0
0
votes
0
replies
573
views
EdgeR without replication
Transcriptomics
18 months ago kuttibiotech2009 • 0
0
votes
0
replies
581
views
Analysis of TIF-seq data to generate transcription start sites (TSS) and poly(A) site (PAS) clusters
Transcriptomics SequencingData
19 months ago Rom • 0
0
votes
0
replies
674
views
Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
19 months ago whduke • 0
0
votes
2
replies
718
views
Questions about `collapseReplicates` function in DESeq2
DESeq2 Transcriptomics
20 months ago Yijing • 0
0
votes
0
replies
553
views
WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network Transcriptomics MicrobiomeData RNASEQ WCGNA
21 months ago Julieta • 0
2
votes
1
reply
1.7k
views
Understanding tximport working with salmon outputs
Transcriptomics tximport
updated 21 months ago by ★ 4.2k • written 21 months ago by ▴ 10
0
votes
3
replies
1.1k
views
DESeq2 - transcript length correction necessary when quantifying reads from ends of transcripts?
Transcriptomics DESeq2
23 months ago marius.wenzel • 0
4
votes
6
replies
1.5k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
2.1 years ago mohammedtoufiq91 ▴ 10
1
vote
3
replies
1.2k
views
Identifying DEG between development stages
plant Transcriptomics DESeq2 r
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
2
votes
5
replies
1.4k
views
DESeq2 with baseline correction for gene expression differences
DESeq2 edgeR Transcriptomics
updated 2.3 years ago by 42k • written 2.3 years ago by • 0
2
votes
2
replies
859
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
2.7 years ago • updated 13 months ago diangomaiga • 0
1
vote
2
replies
1.4k
views
Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
2.8 years ago Barista • 0
0
votes
0
replies
946
views
Job: Senior Bioinformatician - University of Alabama at Birmingham
JobPosting Transcriptomics SingleCell RNA-seq
2.9 years ago lianov • 0
0
votes
0
replies
872
views
Job: [apply by 8/15] PhD scholarship on functional and evolutionary genomics
JobPosting Transcriptomics GenomicVariation
2.9 years ago marie • 0
0
votes
2
replies
1.0k
views
Downloading org.Mm.eg.db after R reinstall
org.Mmu.eg.db Transcriptomics
3.2 years ago Kate • 0
0
votes
0
replies
962
views
Consensus wgcna soft threshold for each data
Transcriptomics WGCNA wgcna
3.2 years ago 2323982403 ▴ 60
0
votes
1
reply
801
views
Metatranscriptomics DESeq2 multifactorial sampling
Transcriptomics DESeq2
updated 3.3 years ago by 42k • written 3.3 years ago by • 0
0
votes
0
replies
970
views
Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
3.3 years ago m.jackson • 0
5
votes
5
replies
2.6k
views
analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
GEO RNASeqR Transcriptomics
updated 3.3 years ago by 66k • written 3.3 years ago by ▴ 10
0
votes
0
replies
968
views
Job: Computational Biologist at Denali Therapeutics
Transcriptomics SingleCell JobPosting
3.5 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
945
views
NanoStringDiff Not Recognized as Numeric
Bioconductor Transcriptomics NanoStringDiff
updated 3.6 years ago by 1.6k • written 3.6 years ago by ▴ 10
0
votes
0
replies
718
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
4.2 years ago raquelponti • 0
1
vote
0
replies
1.0k
views
News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq course proteomics transcriptomics scrnaseq News
4.4 years ago Laurent Gatto 1.6k
0
votes
4
replies
1.1k
views
GOexpress - Error when plotting expression data
RNA-seq transcriptomics gene ontology gene expression GOexpress
updated 4.4 years ago by ▴ 350 • written 4.4 years ago by • 0
0
votes
0
replies
938
views
Job: Bioinformatics Scientist, CNS Transcriptomics at Alnylam Pharmaceuticals, Cambridge MA, USA
scRNA-seq CNS transcriptomics RNAi Job
4.5 years ago Joseph Barry ▴ 10
0
votes
0
replies
787
views
Job: Bionformatician in personalized oncotherapy (BEL)
job bioinformatician immunotherapy genomics transcriptomics Job
4.6 years ago cedric • 0
1
vote
0
replies
895
views
Job: Bioinformatics PhD: The circadian clock in the ageing plant, University of York, UK
transcriptomics gene expression time series plant biology circadian Job
4.7 years ago dezer ▴ 10
2
votes
2
replies
3.0k
views
How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 4.7 years ago by 51k • written 4.7 years ago by ▴ 10
2
votes
0
replies
2.4k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
4.7 years ago Laurent Gatto 1.6k
1
vote
1
reply
953
views
cpm filtering parameter
cpm filtering transcriptomics rnaseq edgeR metatranscriptomics
updated 4.8 years ago by 51k • written 4.8 years ago by ▴ 10
0
votes
0
replies
955
views
Job: Bionformatician Position / Heidelberg
neuroscience data integration transcriptomics Job
5.2 years ago slezak • 0
0
votes
0
replies
812
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
5.2 years ago Wuschel ▴ 10
1
vote
0
replies
1.6k
views
Job: Full time and permanent research logistician in Bioinformatics
transcriptomics proteomics job bioinformatician Job
5.3 years ago • updated 5.2 years ago Laurent Gatto 1.6k
1
vote
1
reply
1.5k
views
News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq deseq2 proteomics transcriptomics workshop News
written 5.3 years ago by 1.6k
3
votes
4
replies
1.3k
views
Writing a loop to clean up protein names
Proteomics Transcriptomics Loops batch-processing R
updated 5.7 years ago by ▴ 80 • written 5.7 years ago by • 0
45 results • Page 1 of 1
Recent ...
Replies
Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Votes
Answer: Get the latest gene name from Entrez ID
Get the latest gene name from Entrez ID
Answer: biomaRt not working - lazy table error
Answer: How to do DESeq2 on Kallisto Data
Comment: Most enriched pathway is not expressed when modifying universe parameter
Awards • All
Popular Question to Hervé Pagès 16k
Popular Question to Dan Tenenbaum ★ 8.2k
Popular Question to swbarnes2 ★ 1.4k
Popular Question to Stephanie M. Gogarten ▴ 870
Popular Question to Jonathan ▴ 10
Locations • All
Vietnam, 1 minute ago
China, 14 minutes ago
WEHI, Melbourne, Australia, 30 minutes ago
The city by the bay, 33 minutes ago
Seattle, WA, United States, 1 hour ago
Traffic: 477 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6