Showing : methylation • reset
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Error while using ChAMP
champ methylation illuminahumanmethylation450k.db illumina450k
updated 8.9 years ago by ▴ 90 • written 8.9 years ago by ▴ 20
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0
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1.3k
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Creating a GenomicRatioSet with non minfi normalized data
minfi methylation illumina450k
8.9 years ago Bioinformatician_R ▴ 20
0
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4
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2.7k
views
Error with Minfi while using read.metharray.exp() and read.metharray function
minfi illumina450k methylation
8.9 years ago Bioinformatician_R ▴ 20
2
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11
replies
11k
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Minfi error in reading Basename column
methylation minfi
updated 9.0 years ago by ▴ 60 • written 10.1 years ago by • 0
0
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3
replies
2.1k
views
SVA package for RRBS - bisulfite methylation data
rrbs batch effect methylation sva
updated 9.0 years ago by • 0 • written 10.2 years ago by ▴ 20
0
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0
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981
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
9.0 years ago arisarkar88 ▴ 40
0
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1
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2.5k
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News: Bug in ChAMP package champ.SVD() function
champ methylation 450k SVD EPIC News
9.1 years ago Yuan Tian ▴ 90
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0
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1.9k
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Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
9.1 years ago rasii • 0
0
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0
replies
1.5k
views
Methylation and gene expression
methylation geneexpression
9.1 years ago Asma rabe ▴ 290
14
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12
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12k
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limma lmFit coefficients and p-values
limma methylation ewas
updated 9.2 years ago by ★ 13k • written 9.2 years ago by ▴ 30
0
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1
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1.8k
views
ChAMP package library loading error
methylation package
9.2 years ago sdeshpande • 0
0
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0
replies
1.2k
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth methylation MBD-seq Repitools
9.3 years ago pm2015 • 0
2
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0
replies
1.5k
views
Job: Two Post-doctoral positions at the CRUK Cambridge Institute
cancer methylation rna-seq Job
9.3 years ago Andy Lynch ▴ 120
1
vote
8
replies
4.4k
views
Normalization starting from beta values in minfi
methylation minfi
written 9.4 years ago by ▴ 290
0
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2
replies
1.4k
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Methylation and gene expression data
methylation geneexpression
updated 9.4 years ago by ▴ 130 • written 9.4 years ago by ▴ 290
0
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0
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1.6k
views
ChAMP ComBat step error: Error in if (min(beta.c) == 0) { : missing value where TRUE/FALSE needed
ChAMP methylation illumina450k
9.4 years ago Daniel E. Weeks ▴ 30
0
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1
reply
1.4k
views
Lumi error in importMethylIDAT
lumi methylation illumina
updated 9.4 years ago by 68k • written 9.4 years ago by • 0
0
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0
replies
1.0k
views
illumina HM 450 data
illumina450k methylation
9.4 years ago niutster • 0
0
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1
reply
2.0k
views
Error in Matrix
minfi methylation EPIC microarray illumina
updated 9.4 years ago by ★ 6.5k • written 9.5 years ago by • 0
2
votes
9
replies
3.5k
views
bumphunter beta values
methylation minfi bumphunter
updated 9.5 years ago by 68k • written 9.5 years ago by ▴ 50
3
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15
replies
5.5k
views
Installing MethylationEPIC minifest and annotation
minfi methylation illuminahumanmethylationepicmanifest illumina
9.5 years ago rasii • 0
4
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8
replies
4.7k
views
minfi MethylationEPIC errors
minfi methylation IlluminaHumanMethylationEPICmanifest IlluminaHumanMethylationEPICanno.ilmn10b.hg19
updated 9.6 years ago by ★ 6.5k • written 9.6 years ago by ▴ 50
0
votes
4
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2.0k
views
minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 9.6 years ago by ★ 6.5k • written 9.6 years ago by ▴ 50
3
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1
reply
1.5k
views
Limma -decideTests interpretation for M-values
limma decidetests methylation
updated 9.6 years ago by 21k • written 9.6 years ago by ▴ 10
1
vote
5
replies
3.6k
views
About methylation data processing
methylation
updated 9.6 years ago by ▴ 760 • written 9.6 years ago by ▴ 290
3
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1
reply
1.6k
views
two 450K methylation array manifests. where is the difference?
methylation 450k
9.7 years ago Pablo marin-garcia ▴ 90
0
votes
2
replies
1.8k
views
Error processing Infinium 450K Methylation data using Minfi
minfi software error methylation illumina450k
updated 2.4 years ago by • 0 • written 9.8 years ago by • 0
0
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0
replies
1.4k
views
Error processing Infinium 450K Methylation data using Minfi
minfi software error methylation illumina450k
9.8 years ago pm2015 • 0
1
vote
0
replies
2.0k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
9.8 years ago enricoferrero ▴ 680
6
votes
14
replies
6.4k
views
How to correctly import Bismark coverage files into bsseq?
bsseq bismark methylation
9.8 years ago enricoferrero ▴ 680
1
vote
1
reply
1.6k
views
Not getting Adjusted p-values from multtest package
multtest methylation adjusted pvalue
updated 9.9 years ago by ▴ 110 • written 9.9 years ago by ▴ 10
0
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0
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2.0k
views
ChAMP: Error using champ.norm() function
ChAMP methylation epigenetics
10.0 years ago jdangelo • 0
1
vote
2
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3.0k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 10.0 years ago by ★ 6.5k • written 10.0 years ago by ▴ 680
0
votes
2
replies
2.3k
views
Reading IDAT files from Illumina HumanMethylation450 BeadChip with beadarray
beadarray illumina methylation microarray
updated 10.0 years ago by 21k • written 10.0 years ago by • 0
2
votes
2
replies
3.2k
views
Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
10.2 years ago metamaden ▴ 10
0
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1
reply
2.0k
views
illumina 450k methylation: Cell composition for saliva
methylation minfi illuminahumanmethylation450k.db saliva cell composition
updated 10.5 years ago by ★ 6.5k • written 10.5 years ago by ▴ 120
0
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2
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2.2k
views
BSseq package for Targeted DNA bisulfite sequencing for DMR analysis
methylation DMR analysis
10.6 years ago parker • 0
1
vote
5
replies
1.8k
views
Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 10.6 years ago by ▴ 80 • written 10.6 years ago by ▴ 370
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0
replies
1.9k
views
Job: Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job sequencing methylation expression Job
10.6 years ago Andy Lynch ▴ 120
1
vote
2
replies
1.9k
views
minfi package QC report error?
minfi methylation illumina
11.0 years ago Brian Smith ▴ 120
2
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2
replies
1.5k
views
Package for iScan methylation data
methylation iscan
11.0 years ago Brian Smith ▴ 120
0
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2
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2.3k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi minfidata illumina methylation dmpfinder
updated 11.0 years ago by 68k • written 11.0 years ago by • 0
142 results • Page 3 of 3
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Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error by James W. MacDonald 68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub by Aaron Lun ★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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