Showing : pathways • reset
2
votes
2
replies
215
views
How many of my genes from my gene list are in each KEGG pathway?
Pathways clusterProfiler gseKEGG KEGG
5 weeks ago julia_mcdonough • 0
0
votes
0
replies
376
views
Job: Postdoc for computational biology on cancer omics data analysis at Liang lab of Wistar Institute, Philadelphia, US
omics cancerdata Pathways
4 months ago omicsresearch • 0
0
votes
1
reply
518
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
12 months ago Grace • 0
0
votes
0
replies
473
views
Changing pathway names in pathway analysis
pathways Pathways
15 months ago Katharina • 0
0
votes
0
replies
636
views
Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
18 months ago whduke • 0
0
votes
0
replies
753
views
Pathway Analysis using GAGE
gage RNASeq gageData Pathways
2.1 years ago OST • 0
1
vote
2
replies
836
views
Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
2.2 years ago • updated 2.1 years ago m.glymenaki • 0
0
votes
6
replies
3.8k
views
extracting the KEGG pathway for a set of genes
Pathways KEGG
2.8 years ago Bogdan ▴ 670
0
votes
4
replies
5.0k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
updated 3.1 years ago by ▴ 350 • written 3.1 years ago by ▴ 10
1
vote
1
reply
1.1k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
3.2 years ago Luo Weijun ★ 1.6k
2
votes
0
replies
952
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.3 years ago Ben ▴ 50
2
votes
2
replies
1.1k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 3.4 years ago by 65k • written 3.5 years ago by • 0
2
votes
1
reply
2.1k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea ssgsea gsva pathways
updated 3.8 years ago by ★ 3.3k • written 3.8 years ago by ▴ 50
0
votes
1
reply
1.7k
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest software error pathways modules kegg
updated 4.1 years ago by 25k • written 4.1 years ago by • 0
0
votes
4
replies
1.0k
views
Fonction of genes/metabolites in a pathway?
gene metabolite functionnal annotation pathways
updated 4.2 years ago by ★ 3.9k • written 4.2 years ago by • 0
0
votes
0
replies
791
views
plotting Signalling Pathways using SPIA
SPIA functional-analysis Pathways KEGG
4.2 years ago Assa Yeroslaviz ★ 1.5k
2
votes
2
replies
988
views
Help for Research Proposal
drug development pathways bioinformatics
updated 5.5 years ago by ★ 13k • written 5.5 years ago by • 0
0
votes
0
replies
974
views
Pathview input error: non-numeric variable in data frame
pathview kegg pathways package
5.6 years ago anc.informatics • 0
0
votes
0
replies
682
views
Interactive metabolic pathway
pathways
5.7 years ago pritim2k6 • 0
0
votes
1
reply
1000
views
Protein pathway analysis -- Classify, organize, and cluster a list of proteins / discovering relations between a set of proteins and linking them to …
protein disease pathway analysis pathways
5.8 years ago ረ • 0
0
votes
0
replies
778
views
Could not find pathways in HSA gmt
pathways gmt
5.9 years ago flalix • 0
0
votes
5
replies
5.8k
views
clusterProfiler: exclude pathways and add gene names to cnetplot
clusterprofiler pathway analysis pathways
updated 18 months ago by • 0 • written 6.0 years ago by ▴ 20
2
votes
4
replies
2.2k
views
ReactomePA / Reactome: Extraction of genes within a term
pathways reactomepa functional annotation
updated 6.0 years ago by ★ 1.2k • written 6.0 years ago by • 0
0
votes
0
replies
1.1k
views
Pathview web - unable to map transcriptomic data
pathways high-throughput transcriptomics nonmodel species
6.1 years ago monteiro • 0
0
votes
0
replies
998
views
igraph PoTRA error
graph pathways igraph
6.2 years ago genomic8328 ▴ 10
0
votes
0
replies
1.2k
views
Two questions about pathifier package
pathways statistics microarray
6.4 years ago arronar • 0
1
vote
0
replies
1.4k
views
Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
6.6 years ago bulfin.triona ▴ 10
0
votes
1
reply
1.9k
views
GAGE or GSEABase using expression data and pathway.gmt file for mouse
R GSEA GAGE pathways
updated 7.0 years ago by ★ 1.6k • written 7.0 years ago by • 0
0
votes
1
reply
2.1k
views
Pathview: visualization of data
pathways
updated 7.2 years ago by ★ 1.6k • written 7.2 years ago by • 0
0
votes
0
replies
1.2k
views
Pathway analysis for diffrential express gene
pathways gage annotation gostats
7.2 years ago avinash gupta ▴ 130
0
votes
0
replies
1.3k
views
Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job phd R pathways Job
7.4 years ago Frank Kramer ▴ 60
0
votes
6
replies
1.6k
views
Is reactome.db still updated?
reactome.db annotation pathways
7.6 years ago Guido Hooiveld ★ 4.0k
0
votes
4
replies
1.9k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 7.6 years ago by ▴ 40 • written 7.6 years ago by • 0
2
votes
0
replies
1.4k
views
Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job job phd R pathways Job
7.7 years ago Frank Kramer ▴ 60
0
votes
2
replies
2.7k
views
WGCNA - Using real data for tutorial III
pathways wgcna network rna-seq
8.4 years ago • updated 8.3 years ago hywel.williams • 0
2
votes
3
replies
4.9k
views
Pathview None of the genes or compounds mapped to the pathway
pathview pathways KEGG empty map
updated 2.8 years ago by • 0 • written 8.4 years ago by ▴ 20
2
votes
1
reply
1.2k
views
Problem with data not found using pathview package
pathways
updated 9.0 years ago by 65k • written 9.0 years ago by • 0
0
votes
2
replies
1.8k
views
retrieve kegg pathway abundances from gage analysis
gage pathways kegg
updated 9.2 years ago by ★ 1.6k • written 9.2 years ago by ▴ 100
0
votes
13
replies
5.9k
views
gage pathways enrichment analysis
gage pathways kegg
updated 9.5 years ago by ★ 1.6k • written 9.5 years ago by ▴ 100
8
votes
14
replies
3.8k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 9.1 years ago by ▴ 150 • written 9.5 years ago by ★ 1.2k
0
votes
2
replies
4.5k
views
Pathway enrichment in bacteria metagenomes
pathways metagenomics
updated 9.5 years ago by ★ 1.6k • written 9.5 years ago by ▴ 100
1
vote
15
replies
3.5k
views
reactome.db: reactome IDs not mapped to pathway names
annotation pathways
updated 9.1 years ago by ▴ 150 • written 9.5 years ago by ★ 2.0k
0
votes
0
replies
2.3k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
9.7 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.7k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
9.7 years ago Guest User ★ 13k
0
votes
0
replies
1.6k
views
Error in keggPathwayGraphs when updateCache = TRUE
Pathways ROntoTools Pathways ROntoTools
9.8 years ago Guest User ★ 13k
0
votes
0
replies
1.3k
views
ISMB talks: Pathview for pathway-based data integration and visualization
Pathways Visualization pathview Pathways Visualization pathview
9.9 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.1k
views
ECCB 2014
Sequencing Pathways Sequencing Pathways
10.0 years ago Wolfgang Raffelsberger ▴ 60
0
votes
0
replies
1.4k
views
PostDoc opportunity
Pathways Network Pathways Network
10.0 years ago Guest User ★ 13k
0
votes
0
replies
1.0k
views
Thalassiosira pseudonana
Annotation Pathways GO Annotation Pathways GO
10.0 years ago nooshin ▴ 300
0
votes
0
replies
1.2k
views
graphite biopax conversion code?
Pathways graphite Pathways graphite
10.0 years ago Ryan C. Thompson ★ 7.9k
50 results • Page 1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Awards • All
Popular Question to euge.eugenio ▴ 20
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Locations • All
Belgium, just now
United States, 13 minutes ago
United States, 25 minutes ago
Poland, 34 minutes ago
The city by the bay, 44 minutes ago
Traffic: 373 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6