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XCMS Data Processing
r xcms metabolomi NTA Metabolomics
updated 13 months ago by 68k • written 13 months ago by • 0
6
votes
10
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3.9k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 14 months ago by ★ 5.0k • written 15 months ago by ▴ 10
0
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0
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527
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[maser] Why does maser coverage filtering ignore skipping counts of an alt. splicing analysis?
rMATS alternativesplicing maser R
16 months ago Anke • 0
1
vote
1
reply
970
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 18 months ago by 68k • written 18 months ago by • 0
2
votes
3
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1.0k
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DeSeq2 Model Problems with species, tissue, and tissue status nesting
DESeq2 R
written 19 months ago by • 0
3
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3
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16k
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How to fix 'long vectors not supported yet' error in R
r
updated 23 months ago by • 0 • written 7.0 years ago by • 0
0
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0
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661
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Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
24 months ago danalvoronov ▴ 10
0
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4
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1.3k
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limma with interaction term
R biostatistics limma Epigenetics
2.0 years ago Jitendra ▴ 10
0
votes
3
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2.5k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 5.0 years ago by • 0
1
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5
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2.9k
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pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 11.0 years ago by ▴ 10
0
votes
10
replies
4.0k
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Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse R SingleCellExperiment SingleCellData
written 2.2 years ago by • 0
0
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0
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761
views
multipollutant models
statistics Regression r limma
2.2 years ago Jitendra ▴ 10
3
votes
4
replies
1.6k
views
Is it appropriate to apply linear mixed models to Voom transformed data?
stats r RNASeqData limma voom
2.3 years ago pl23 • 0
1
vote
3
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2.8k
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Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 2.3 years ago by ▴ 750 • written 4.8 years ago by • 0
0
votes
10
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2.1k
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Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
2.3 years ago • updated 24 months ago ScafioRuo • 0
12
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10
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17k
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biomaRt not working - lazy table error
error lazy R biomaRt table
updated 23 months ago by • 0 • written 2.3 years ago by ▴ 20
0
votes
2
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1.4k
views
DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq HTSeq R
2.6 years ago • updated 2.5 years ago yr542 • 0
1
vote
2
replies
1.5k
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biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
2.6 years ago Miguel • 0
2
votes
5
replies
2.2k
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Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
R edgeR RNASeq
2.6 years ago mohammedtoufiq91 ▴ 10
0
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1
reply
1.1k
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Gene enrichment analysis
analysis R GOfuncR
updated 2.7 years ago by ▴ 760 • written 2.7 years ago by • 0
0
votes
2
replies
2.0k
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Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 2.7 years ago by • 0 • written 5.0 years ago by • 0
0
votes
1
reply
1.2k
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Subtype specific differential expression analysis
R limmaGUI edgeR limma regutools
updated 2.8 years ago by 53k • written 2.8 years ago by • 0
0
votes
1
reply
940
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DEseq2 Single cell data paired design
R
updated 2.8 years ago by ▴ 30 • written 2.8 years ago by • 0
0
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4
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1.9k
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Combine RNA-seq
BatchEffect R rnaseq
updated 2.8 years ago by ★ 1.4k • written 2.8 years ago by • 0
1
vote
3
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1.8k
views
tximport error
tximport r
updated 2.8 years ago by 43k • written 2.9 years ago by • 0
1
vote
2
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1.9k
views
Filter by expression and keep probes in limma
R filter limma Normalization Microarray
2.9 years ago Abdul ▴ 20
0
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0
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982
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
2.9 years ago aymanreffai • 0
1
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1
reply
3.7k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 2.9 years ago by ★ 4.1k • written 2.9 years ago by ▴ 10
0
votes
4
replies
1.9k
views
Unable to install BiocManager
Biocmanager R
updated 2.9 years ago by ▴ 50 • written 2.9 years ago by • 0
1
vote
1
reply
2.3k
views
Error in h5checktype(). H5Identifier not valid.
rhdf5 rhdf r
updated 2.9 years ago by • 0 • written 3.0 years ago by • 0
0
votes
13
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15k
views
KEGG enrichment in R and gene IDs
KEGG enrichKEGG R entrezid
2.9 years ago Laia ▴ 10
1
vote
3
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9.3k
views
Reduce the number of nodes appear in the cnetplot of clusterprofiler
cnetplot R clusterProfiler
updated 3.0 years ago by ★ 4.1k • written 3.0 years ago by ▴ 10
0
votes
1
reply
1.8k
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scRNAseq package and cell type annotations
ExperimentHub R ExperimentHubData scRNAseq SingleR
updated 3.0 years ago by ▴ 760 • written 3.0 years ago by ▴ 10
0
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0
replies
929
views
rDGIdb package: score of the results
rDGIdb r
3.0 years ago HELEN • 0
2
votes
1
reply
971
views
add column with name in R
name R column
updated 3.0 years ago by ▴ 70 • written 3.0 years ago by • 0
0
votes
4
replies
2.2k
views
how to extract list in quantile in R
R quantile list
3.0 years ago sat • 0
0
votes
0
replies
1.4k
views
KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
Survival TCGAbiolinks R PAAD
3.0 years ago Manav • 0
0
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0
replies
1.2k
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
3.0 years ago Jitendra ▴ 10
3
votes
2
replies
1.7k
views
how to extract and match information of two filein R
R column match
3.0 years ago sat • 0
0
votes
0
replies
1.1k
views
News: Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics R Bioconductor MassSpectrometry
3.0 years ago info ▴ 10
0
votes
17
replies
3.2k
views
How to check linear model
modalmatrix limma R linear
3.0 years ago Jitendra ▴ 10
0
votes
1
reply
1.3k
views
customised help function in argparse() in R
command-line R command-line-arguments argparse()
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
3
replies
2.3k
views
batch effect in EPIC array data
statistics Epigenetics R
updated 3.0 years ago by ▴ 760 • written 3.0 years ago by ▴ 10
1
vote
2
replies
1.8k
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
3.0 years ago abhisek001 • 0
0
votes
4
replies
1.8k
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2 biomaRt R
3.0 years ago Dr. • 0
0
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1
reply
2.4k
views
Extract Intersection Values from Venn
R Venn
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
2
votes
6
replies
3.0k
views
DMRcate
DMRcate R DMRcatedata Markdown
3.0 years ago yr542 • 0
0
votes
0
replies
981
views
How to use MeDIPS with BEDPE format input?
R medip-seq MEDIPS
3.1 years ago Luomeng • 0
2
votes
9
replies
2.3k
views
mas5calls function doesn't work; mirna40cdf problem
R Bioconductor mas5calls
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
1
vote
2
replies
5.5k
views
R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 3.1 years ago by 53k • written 3.1 years ago by • 0
1,163 results • Page 1 of 24
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Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by James W. MacDonald 68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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