Showing : snp • reset
0
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3
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719
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt SNP
updated 13 months ago by 65k • written 13 months ago by • 0
0
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0
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495
views
Human to mouse SNP conversion
liftOver SNP GWASTools
13 months ago bonheur • 0
0
votes
4
replies
764
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
13 months ago Weiqiong • 0
0
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1
reply
887
views
How to remove INDELS/SNPs from a bed file
SNP
updated 17 months ago by 65k • written 17 months ago by • 0
0
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0
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479
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
18 months ago m610110001 • 0
0
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0
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660
views
ACMG Annotations for Variants in R
ACMG SNP
22 months ago hamza_karakurt ▴ 50
0
votes
2
replies
2.6k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 2.2 years ago by • 0
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.3 years ago by ▴ 870 • written 2.4 years ago by • 0
0
votes
1
reply
814
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Get CHR & POS for a list of SNP rs ids (>1M)
POS CHR SNP rs
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
0
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0
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856
views
Reading Affymetrix Axiom files
affy SNP axiom
3.0 years ago f.calboli • 0
0
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0
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730
views
Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.1 years ago Amber • 0
5
votes
4
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9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 9 months ago by 65k • written 3.7 years ago by • 0
6
votes
11
replies
1.8k
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 3.7 years ago by ★ 6.5k • written 3.7 years ago by • 0
2
votes
2
replies
2.5k
views
How to convert 1000 genomes VCF files to the format of traditional SNP array format?
SNP 1000genome
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 20
1
vote
2
replies
1.3k
views
TCGA MAF (Mutations) data
TCGA MAF GDC snp mutations
updated 5.0 years ago by 21k • written 5.0 years ago by ▴ 160
0
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0
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816
views
genetic and linkage maps construction
genetic map linkage maps SNP assembly GBS
5.3 years ago mictadlo ▴ 10
0
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0
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746
views
R: estimating error rate of replicated samples
R SNP genotyping genetic diversity
5.3 years ago meriam.nef • 0
0
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0
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1.5k
views
How to extract SNPs from multiple alignment fasta file?
snp multiple sequence alignment fasta Tutorial
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
0
votes
1
reply
1.2k
views
Finding/Understanding Affy 6.0 Annotation File
affy affymetrix microarray SNP
5.7 years ago CantExitVIM ▴ 10
0
votes
1
reply
1.8k
views
VCF file non-SNP germline mutations
PureCN VCF SNP
updated 6.0 years ago by ▴ 130 • written 6.0 years ago by ▴ 10
3
votes
5
replies
1.6k
views
Understanding PureCN and its germline SNPs
PureCN germline SNP
updated 5.9 years ago by • 0 • written 6.1 years ago by ▴ 10
0
votes
1
reply
1.3k
views
How to draw venn diagram with four CSV files
R SNP venn diagram
updated 6.3 years ago by 65k • written 6.3 years ago by • 0
0
votes
0
replies
824
views
Wtccc sanger dataset
SNP
6.3 years ago hadeel.alzoubi • 0
0
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1
reply
1.1k
views
How to map a SNP to all genes within 50kb (upstream or downstream) of the SNP?
annotation R snp
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 10
0
votes
0
replies
900
views
Error when changing the database for minfi dropLociWithSnps
minfi methylationepic illuminahumanmethylationepicanno.ilmn10b.hg19 SNP
6.8 years ago Ellen O • 0
2
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1
reply
1.3k
views
GenomicAlignments/access correct bp positions near indels
genomicranges genomicalignments snp
updated 7.0 years ago by 16k • written 7.0 years ago by ▴ 90
3
votes
4
replies
1.5k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
7.2 years ago Ramiro Magno ▴ 100
1
vote
2
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3.5k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment SNP dnasequence
7.2 years ago lordbleys • 0
3
votes
3
replies
1.9k
views
Retrieve SNP flanking sequences in biomaRt
biomart snp upstream_flank downstream_flank
updated 7.5 years ago by ★ 6.5k • written 7.5 years ago by ▴ 20
0
votes
2
replies
1.6k
views
injectSNPS only for common variants
snp snplocs
updated 7.5 years ago by ★ 3.3k • written 7.5 years ago by • 0
0
votes
0
replies
1.1k
views
vizualization of mutations
genomes SNP
7.6 years ago Bogdan ▴ 670
0
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0
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1.1k
views
Illumina Genotyping in parallel raise an error
crlmm snp illumina
7.8 years ago nadne ▴ 10
1
vote
0
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2.1k
views
Job: Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
rnaseq snp chipseq Job
7.9 years ago altuna akalin ▴ 20
0
votes
1
reply
1.3k
views
Error with FunciSNP
snp R gwastools
8.1 years ago • updated 8.0 years ago musomilan • 0
2
votes
3
replies
2.4k
views
ggbio circular plot
ggbio SNP granges
updated 8.4 years ago by ★ 11k • written 8.4 years ago by • 0
5
votes
9
replies
4.2k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
8.4 years ago KB ▴ 50
0
votes
1
reply
1.1k
views
Distance measure used by snpgdsPCA in SNPRelate
snp clustering
8.5 years ago mattcott • 0
1
vote
2
replies
2.1k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 8.6 years ago by ▴ 20 • written 8.6 years ago by • 0
0
votes
0
replies
1.1k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
8.8 years ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
1.3k
views
trouble with predictCoding( function
snp variantannotation predict coding
8.9 years ago vakul.mohanty ▴ 20
0
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2
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3.3k
views
Pipeline for analyzing CNV (SNP array) level 3 from TCGA
SNP CNV TCGA
9.0 years ago NS ▴ 60
0
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2
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4.8k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
9.1 years ago mrprao • 0
0
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0
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1.4k
views
DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
9.3 years ago giovanni.dario • 0
1
vote
6
replies
2.3k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
9.4 years ago garrisrg ▴ 10
1
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2
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1.7k
views
biomaRt error message
biomaRt snp
updated 9.5 years ago by ▴ 800 • written 9.5 years ago by ▴ 10
0
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0
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1.5k
views
Any R Package To Detect Copy Neutral LOH for SNP 6.0 Array Data
microarray affy snp
9.5 years ago sun ▴ 100
5
votes
5
replies
4.2k
views
SNP Function Information from biomaRt
biomart snp nonsynonymous
updated 9.6 years ago by 21k • written 9.6 years ago by ▴ 10
0
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0
replies
1.4k
views
ChIPpeakAnno
SNP Annotation annotate convert SNP Annotation annotate convert
9.7 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
2.5k
views
help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip
SNP VariantAnnotation Annotation probe VariantAnnotation GWASTools SNP VariantAnnotation
updated 9.9 years ago by ▴ 870 • written 9.9 years ago by ▴ 160
0
votes
6
replies
2.5k
views
crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 9.9 years ago by ▴ 1000 • written 9.9 years ago by ▴ 160
50 results • Page 1 of 1
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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