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13
votes
35
replies
20k
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RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice
david
updated 7.6 years ago by
gevermalc
• 0 • written 10.6 years ago by
Vivek.b
▴ 100
0
votes
17
replies
3.6k
views
Defining Weights in marrayNorm.
Microarray
Microarray
updated 22.5 years ago by
Yuk Fai Leung
▴ 100 • written 22.6 years ago by
Josef Walker
▴ 20
3
votes
18
replies
5.1k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
2.7 years ago • updated 22 months ago
shepherl
4.3k
2
votes
27
replies
6.3k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
10.4 years ago • updated 10.3 years ago
alexgraehl
▴ 20
0
votes
20
replies
7.5k
views
ttest or fold change
updated 22.2 years ago by
Garrett Frampton
▴ 20 • written 22.2 years ago by
Jason Hipp
▴ 40
0
votes
18
replies
5.7k
views
Genbank to Unigene IDs
annotate
AnnBuilder
annotate
AnnBuilder
updated 21.9 years ago by
Kane, David
▴ 10 • written 21.9 years ago by
Gordon Smyth
53k
0
votes
15
replies
1.6k
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
written 20 months ago by
abhisek001
• 0
0
votes
13
replies
3.7k
views
two color arrays normalization
limma
limma
updated 17.0 years ago by
Jenny Drnevich
★ 2.0k • written 17.1 years ago by
Giusy Della Gatta
▴ 110
0
votes
22
replies
4.7k
views
'x' has "out of limits" views ,Issue with the file size!! Compareequence function is not working
compilation error
filesize
bioconductor
8.5 years ago
susobhanbaidya
• 0
8
votes
17
replies
19k
views
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA
Sample Size
Outliers
updated 10.5 years ago by
mh.manoj
• 0 • written 11.0 years ago by
brohawndg
▴ 150
1
vote
24
replies
7.2k
views
GenomicAlignments - extracting sequence signatures from bam file
bam file
HIV
cytosine
8.4 years ago
achaillon
• 0
1
vote
16
replies
5.1k
views
Error: could not find function "dba"
software error
diffbind
dba
9.3 years ago
mmarins
• 0
11
votes
25
replies
13k
views
readCufflinks problem with extdata
cummerbund
updated 8.4 years ago by
markus.ball
▴ 10 • written 8.7 years ago by
biakemi
▴ 40
1
vote
12
replies
4.5k
views
Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
software error
rcytoscape
xml
updated 11.3 years ago by
drsuuzzz
• 0 • written 11.3 years ago by
alessandro brozzi
▴ 120
0
votes
16
replies
3.9k
views
Finding GO leaf nodes for an ontology - which package?
updated 18.6 years ago by
Seth Falcon
★ 7.4k • written 18.6 years ago by
Tim Smith
★ 1.1k
0
votes
27
replies
4.4k
views
summarizeOverlaps mode ignoring inter feature overlaps
12.9 years ago
Thomas Girke
★ 1.7k
2
votes
12
replies
3.8k
views
I want to order genes in GO groups
gene ontology
genefilter
updated 10.4 years ago by
b.nota
▴ 370 • written 10.5 years ago by
kanacska
▴ 10
0
votes
16
replies
3.9k
views
Affy: Present calls in an eset
updated 22.4 years ago by
Stephen Henderson
★ 1.0k • written 22.4 years ago by
Arne.Muller@aventis.com
▴ 620
4
votes
21
replies
5.1k
views
RMA normaliztion using XPS
normalization
xps
updated 10.9 years ago by
cstrato
★ 3.9k • written 10.9 years ago by
dhwani.dholakia
• 0
0
votes
11
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
24 months ago • updated 16 months ago
shepherl
4.3k
0
votes
10
replies
2.9k
views
ABPkgBuilder Error;
20.6 years ago
Barry Henderson
▴ 250
3
votes
12
replies
5.2k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 8.5 years ago by
Thomas Carroll
▴ 420 • written 11.0 years ago by
atisou
• 0
2
votes
15
replies
4.6k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
10.9 years ago • updated 10.8 years ago
mnaymik
▴ 10
0
votes
10
replies
3.9k
views
read.GenePix not opening connection
Microarray
marray
Microarray
marray
updated 20.7 years ago by
Tony Kowal
▴ 20 • written 20.7 years ago by
Amy Mikhail
▴ 460
0
votes
10
replies
3.2k
views
how to revert to an older limma version?
18.7 years ago • updated 18.6 years ago
Maya Bercovich
▴ 50
1
vote
13
replies
7.2k
views
ERROR: dependency 'GO.db' is not available for package 'systemPipeR'
software error
9.6 years ago
phpaul2010
• 0
4
votes
15
replies
4.4k
views
Converting Synapter object output into a MSnbase-compatible object
synapter
msnbase
10.5 years ago • updated 10.4 years ago
diana.schreier
• 0
0
votes
12
replies
3.0k
views
KEGGSOAP
KEGGSOAP
KEGGSOAP
updated 19.9 years ago by
Seth Falcon
★ 7.4k • written 20.0 years ago by
Dr.Mayhaus Manuel
▴ 30
1
vote
21
replies
5.1k
views
Rsubread stopping half-way through align
rsubread
9.6 years ago • updated 9.5 years ago
Campbell.1933
• 0
6
votes
22
replies
5.7k
views
Oligo package: paCalls questions
microarray
oligo
updated 10.7 years ago by
cstrato
★ 3.9k • written 10.7 years ago by
whyuen
▴ 20
0
votes
17
replies
3.2k
views
Coverage by base
Coverage
Coverage
14.4 years ago
rohan bareja
▴ 200
0
votes
8
replies
2.4k
views
uppercase & lowercase
updated 18.7 years ago by
Saroj Mohapatra
▴ 450 • written 18.7 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
8
replies
6.0k
views
GSVA: problem with chip annotation
gsva
updated 11.3 years ago by
Robert Castelo
★ 3.4k • written 11.3 years ago by
q017mm
• 0
0
votes
10
replies
5.6k
views
GOStat and multiple testing
GO
GOstats
GO
GOstats
updated 21.6 years ago by
A.J. Rossini
▴ 810 • written 21.6 years ago by
Arne.Muller@aventis.com
▴ 620
0
votes
13
replies
7.5k
views
gage pathways enrichment analysis
gage
pathways
kegg
updated 11.2 years ago by
Luo Weijun
★ 1.6k • written 11.3 years ago by
francesca.defilippis
▴ 100
7
votes
28
replies
9.2k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread
featurecounts
updated 2.1 years ago by
Gordon Smyth
53k • written 11.0 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
12
replies
8.5k
views
ChAMP input: Beta Matrix?
champ
dmr analysis
updated 20 months ago by
tahirah.yasmin2014
• 0 • written 10.0 years ago by
Shicheng Guo
• 0
0
votes
14
replies
3.8k
views
got 0 significant differential bound (DB)
diffbind
8.7 years ago
mforoo1
• 0
0
votes
11
replies
3.1k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
VariantAnnotation
Annotation
VariantAnnotation
VariantTools
VariantAnnotation
Annotation
updated 12.2 years ago by
Valerie Obenchain
★ 6.8k • written 12.2 years ago by
Thomas Girke
★ 1.7k
5
votes
14
replies
6.0k
views
gene symbols in Gviz
Gviz
10.6 years ago
Bogdan
▴ 670
0
votes
10
replies
3.5k
views
Getting rawdata for TMM normalization
normalization
9.7 years ago
humberto_munoz
• 0
0
votes
12
replies
4.9k
views
testing GO categories with Fisher's exact test.
GO
Category
GO
Category
updated 22.0 years ago by
James W. MacDonald
68k • written 22.0 years ago by
Nicholas Lewin-Koh
▴ 430
0
votes
9
replies
4.6k
views
rhdf5 32-bit unsigned int issue
rhdf5
bug
updated 10.6 years ago by
Bernd Fischer
▴ 550 • written 10.7 years ago by
wrob311
• 0
0
votes
21
replies
6.7k
views
unable to readImage using EBImage package
EBImage
EBImage
updated 13.9 years ago by
Nurdiyanah Jambari
▴ 90 • written 14.0 years ago by
Guest User
★ 13k
2
votes
30
replies
6.2k
views
ggbio 1.12.0 autoplot() with txdb example is broken
TranscriptDb
TranscriptDb
updated 11.8 years ago by
Tengfei Yin
▴ 490 • written 11.9 years ago by
Leonardo Collado Torres
★ 1.1k
0
votes
9
replies
2.9k
views
Pooling in microarray studies
updated 22.4 years ago by
Tan, MinHan
▴ 180 • written 22.4 years ago by
Wiesner Vos
▴ 50
1
vote
9
replies
5.4k
views
Question about ChiPseeker: plot other values in plotAvgProf2
ChiPseeker
updated 10.4 years ago by
Guangchuang Yu
★ 1.2k • written 10.4 years ago by
francesca casalino
▴ 50
0
votes
8
replies
2.4k
views
info su illumina
updated 20.1 years ago by
Lynn Amon
▴ 110 • written 20.1 years ago by
Alberto Goldoni
▴ 360
2
votes
13
replies
4.5k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
9.5 years ago • updated 9.0 years ago
s.munster
▴ 40
0
votes
13
replies
2.7k
views
Is a number within a set of ranges?
Cancer
Cancer
18.3 years ago
Daniel Brewer
★ 1.9k
46,779 results • Page
1 of 936
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Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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