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5
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2.4k
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GenomicRanges object no longer viewable
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updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 80
1
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3
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5.5k
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ANOVA-like test with edgeR
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updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
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1.2k
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bioCLite instalation failed
software error
5.6 years ago emily.biostats.1999 • 0
1
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2
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860
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DEXSeq Illegal Strand Error
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5.6 years ago huck.thornton ▴ 10
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2
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biomaRt asked to report: The number of columns in the result table does not equal the number of attributes in the query.
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3
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the result of swish function from fishpond package
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Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
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RnBeads::combine() - error?
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0
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1.7k
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Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
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5.6 years ago Laurent Gatto 1.6k
4
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9
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DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
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updated 4.2 years ago by ▴ 30 • written 5.6 years ago by ▴ 10
2
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8
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3.9k
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DelayedArray loading Warning causes stop in Bioconductor 3.12
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updated 5.6 years ago by 16k • written 5.6 years ago by ▴ 10
0
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News: Long-term contribution award
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900
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Quality Metrics for Graph Clustering for Biological Networks
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5.6 years ago hamza_karakurt ▴ 60
1
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5
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No enriched GO terms with 1000 more genes
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5.6 years ago Ruixuan ▴ 10
0
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1
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1.2k
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incorrect number of dimensions in probeSetSummary function from GOstats
GOstats GO R
updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 10
1
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3
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1.3k
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Highlight uniq transcripts in Gviz
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
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2
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1.2k
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Differential analysis of protein spectral counts using msnSet object
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
0
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2
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1.4k
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GenomicFeatures load problem : "namespaceExport(ns, exports): undefined exports: %>%"
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updated 5.6 years ago by 25k • written 5.6 years ago by • 0
2
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7
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Limma analysis with multiple variables
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updated 5.6 years ago by 53k • written 5.6 years ago by • 0
0
votes
1
reply
1.3k
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compareCluster error: On clusterProfiler DEGs enrichments analysis
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5.6 years ago tpm • 0
6
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3
replies
2.2k
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GEOquery: preprocessing log of imported data
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updated 5.6 years ago by 21k • written 5.6 years ago by ▴ 40
2
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4
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845
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size factor not 1
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updated 5.6 years ago by ★ 1.4k • written 5.6 years ago by ▴ 40
1
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1
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1.3k
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Error when installing edgeR and DESeq package
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updated 5.6 years ago by 68k • written 5.6 years ago by • 0
1
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3
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2.1k
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deseq2 - paired samples in 2 sequencing types with very different library sizes
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updated 4.8 years ago by 43k • written 5.6 years ago by • 0
0
votes
1
reply
906
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Which internal tool does DiffBind uses to count BAM reads to calculate sizeFactor?
DiffBind ChIP-seq
updated 5.6 years ago by ★ 5.2k • written 5.7 years ago by ▴ 10
0
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1
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2.0k
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use diffbind with normilized bedgraph files from spike ins
diffbind chip-seq chip spike spike-ins
updated 5.6 years ago by ★ 5.2k • written 5.7 years ago by ▴ 10
0
votes
1
reply
672
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DiffBind count() error or it crashes R Studio
diffbind
updated 5.6 years ago by ★ 5.2k • written 5.8 years ago by • 0
1
vote
2
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945
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Annotation best practices
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updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 20
0
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0
replies
1.3k
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News: Documentation Bioconductor Award
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5.6 years ago shepherl 4.3k
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1
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2.3k
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ComplexHeatmap's UpSet plots: how to convert a binary matrix into a list of sets
ComplexHeatmap UpSet
5.6 years ago moldach ▴ 20
0
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2
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6.8k
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plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
0
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0
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1.4k
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News: List of Deprecated Packages for Bioc3.12
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5.6 years ago shepherl 4.3k
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0
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5.6 years ago shepherl 4.3k
2
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4
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scRNA-seq question, assayData() error
assayData() scRNA-seq single cell sequencing assayData Bioconductor
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 10
3
votes
2
replies
1.4k
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readMSData and netCDF files, only TIC intensity available
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5.6 years ago julien.kermorvant ▴ 30
0
votes
0
replies
944
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fastMNN reconstructed matrix
fastMNN Interpretation
5.6 years ago mloza ▴ 10
6
votes
6
replies
5.9k
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Limma multi-group analysis - General F-test
limma experimental design
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 10
1
vote
2
replies
1.4k
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DESeq Error (nbinomTest ())
Deseq nbinomTest
5.6 years ago canfield ▴ 10
1
vote
1
reply
2.2k
views
How to imports DS field from VCF files with SeqArray seqVCF2GDS()
seqArray seqVCF2GDS
updated 5.6 years ago by ▴ 890 • written 5.6 years ago by • 0
1
vote
8
replies
3.6k
views
Extracting raw read counts in DiffBind consensus peak set
DiffBind
updated 5.6 years ago by ★ 5.2k • written 5.6 years ago by • 0
8
votes
10
replies
3.3k
views
Compare ranges from two GRanges and check if the ranges from the first GRanges is contained in another.
GRanges IRanges
updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 50
1
vote
3
replies
1.2k
views
CRISPRseek adjustments for Cpf1/Cas12a
CRRISPRseek gRNA.backbone subPAM.activity rule.set
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by • 0
3
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4
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3.1k
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Reporting S values? Reporting padj values?
deseq2 apeglm
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 20
0
votes
0
replies
1.2k
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News: Support Site Bioconductor Award
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5.6 years ago shepherl 4.3k
2
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3
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1.4k
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Error using tximport on Salmon with sparseMatrix on scaledTPM option
tximport Salmon sparse
updated 5.6 years ago by 43k • written 5.6 years ago by • 0
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