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0
votes
0
replies
1.1k
views
Regarding featureCounts and Rsubread
rnaseq
8.7 years ago
sancharisircar24
• 0
2
votes
8
replies
5.1k
views
"minfi" loading problem because of couldn't "bumphunter" load
bumphunter
minfi
loading error
rtracklayer
updated 8.7 years ago by
nilan666
• 0 • written 8.7 years ago by
juan-pablo.cerapio-arroyo
▴ 10
1
vote
8
replies
4.2k
views
GenomicFeatures package ERROR
software error
genomicfeatures
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 10.1 years ago by
liangwu887
• 0
5
votes
6
replies
4.0k
views
Is mapId supposed to concatenate multiVals?
annotationdbi
ensembldb
updated 8.7 years ago by
Johannes Rainer
★ 2.1k • written 8.7 years ago by
Steve Lianoglou
★ 13k
0
votes
0
replies
1.3k
views
gene expression data analysis and batch effect methods
batch effect
gene expression
8.7 years ago
tati6406
• 0
1
vote
1
reply
1.1k
views
Searchseq function in TFBSTools says 'could not find function "unsafe.update"'
R
software error
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
sun.1071
▴ 10
0
votes
2
replies
1.6k
views
DESeq2 ddsHTSeq error
deseq2
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
Matthew McCormack
▴ 180
2
votes
4
replies
4.4k
views
Biostrings translate() function with alternative genetic code is not working for first codon
biostrings
genetic code
translate
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
atisou
• 0
0
votes
2
replies
4.8k
views
Problem running featurecounts in Rsubread on GFF file
rsubread
featurecounts
gff
Grch38.p7 vs hg38
8.7 years ago
raf4
▴ 30
0
votes
5
replies
2.1k
views
Rsubread crash on Mac during alignment
software error
rsubread
9.0 years ago • updated 8.7 years ago
raf4
▴ 30
0
votes
3
replies
2.3k
views
Bioconductor installation problem (MacOSX El-Capitan)
biocinstaller
8.7 years ago
zhanxw
• 0
0
votes
0
replies
1.4k
views
edgeR: mapping among ENSEMBL Enrtez and RefSeq.
mapping among ENSEMBL Enrtez and RefSeq.
8.7 years ago
zhang.jianhai
▴ 10
0
votes
16
replies
3.4k
views
How does newSCESet calculate expression matrix
scater
updated 8.7 years ago by
davis
▴ 90 • written 8.7 years ago by
siajunren
• 0
0
votes
1
reply
2.2k
views
P value <0.05 and Q values~ 1
ballgown
updated 8.7 years ago by
Jeff Leek
▴ 650 • written 8.7 years ago by
akilabioinfo
• 0
1
vote
1
reply
2.6k
views
Outliers - to remove or to not remove that is the question
outliers
rna
microarray
updated 8.7 years ago by
chris86
▴ 420 • written 8.7 years ago by
bhgyu
▴ 30
0
votes
4
replies
2.1k
views
how to normalize mogene 2.1 st array?
affy
11.2 years ago • updated 8.7 years ago
aritra
• 0
0
votes
7
replies
3.4k
views
Error in pathview - came out of nowhere without any source code modification
pathview
updated 8.7 years ago by
Luo Weijun
★ 1.6k • written 8.7 years ago by
Mataivic
• 0
2
votes
2
replies
1.6k
views
miRNA differential expression analysis
edger
glm.fit
updated 8.7 years ago by
Gordon Smyth
53k • written 8.7 years ago by
kamyasingh90
• 0
7
votes
11
replies
17k
views
Error: package or namespace load failed for...
package installation
flowviz
flowcore
rcpp
flow cytometry
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
nickflowcyto
▴ 50
2
votes
6
replies
4.9k
views
DESeq2 minReplicatesForReplace with different group size
DESeq2
8.7 years ago
Jane Merlevede
▴ 90
0
votes
1
reply
2.7k
views
DESeq2 rlogTransformation error
deseq2
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
helen.cwp
• 0
2
votes
6
replies
1.9k
views
Complicated paired multi factor design
deseq2
multiple factor design
8.7 years ago
Vladimir Krasikov
▴ 90
2
votes
1
reply
836
views
How does it work with submitting a package to the bioconductor and doing the paper together?
bioconductor
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
chris86
▴ 420
2
votes
5
replies
2.7k
views
Multiple Sequence Alignment using DNA sequence
msa
decipher
8.7 years ago
bbista91
▴ 10
2
votes
5
replies
5.8k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
Sophie
• 0
1
vote
2
replies
3.0k
views
Error in installing Gviz
updated 8.7 years ago by
Sameet Mehta
▴ 30 • written 12.3 years ago by
马磊
▴ 10
0
votes
0
replies
1.1k
views
Interpreting Spade analysis results
spade
8.7 years ago
Pankaj Agarwal
▴ 100
5
votes
9
replies
5.3k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC
bsgenome
phastcons
rtracklayer
updated 8.7 years ago by
Ou, Jianhong
★ 1.3k • written 8.7 years ago by
crysis405
▴ 10
0
votes
0
replies
1.1k
views
ChIPQC comparison of controls - uniqueness error
chipqc
8.7 years ago
Coby Viner
▴ 50
0
votes
1
reply
3.1k
views
Error in solve.default(t(mod) %*% mod) : Lapack routine dgesv: system is exactly singular: U[4,4] = 0
sva
R
removebatcheffect
8.7 years ago
aina.jene
▴ 10
1
vote
2
replies
1.2k
views
How to retrieve all logFCs fom "glmQLFTest()" output-edgeR?
edgeR "glmQLFTest()"
8.7 years ago
zhang.jianhai
▴ 10
0
votes
1
reply
3.3k
views
warnings: closing unused connection
parallel computation
updated 8.7 years ago by
Charles Plessy
▴ 180 • written 8.7 years ago by
Haiying.Kong
▴ 110
0
votes
2
replies
3.2k
views
LEA won't run lfmm sequentially and independently on individual environmental variables when d set to 0
LEA
Tutorial
lfmm
updated 4 months ago by
Michael Love
43k • written 8.7 years ago by
afreedman405
• 0
5
votes
0
replies
1.5k
views
Job:
Sheffield Bioinformatics Core Analyst
job
bioinformatics core
uk
data analyst
Job
8.7 years ago
Mark Dunning
★ 1.1k
4
votes
3
replies
6.1k
views
What is the proper way to modify mcols of a GRanges inside a GRangesList?
granges
metadata
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
0
replies
1.2k
views
minfi error with dmpfinder
methylation
illumina
8.7 years ago
indranipoddar
• 0
0
votes
4
replies
2.5k
views
Errror cummeRbund installation
cummerbund
annotationfilter
8.7 years ago
esraesmeray1990
• 0
1
vote
1
reply
1.1k
views
Differential expression after different normalization methods
deseq2
differential expression
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
Bio_Ram
• 0
0
votes
5
replies
1.3k
views
deseq2 outliers problems
deseq2
8.7 years ago
aristotele_m
▴ 40
4
votes
7
replies
5.5k
views
Alternative packages to limma for analysis of microarray datasets
limma
microarray
deg
updated 8.7 years ago by
Bernd Klaus
▴ 610 • written 8.7 years ago by
Maximilian
▴ 10
1
vote
5
replies
3.6k
views
DESeq2: How to find out how well the model fits the data?
rnaseq
linear model
fit
deseq2
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
lina.faller
▴ 10
1
vote
2
replies
1.4k
views
calcAverage missing from Scater package
scater
updated 8.7 years ago by
Aaron Lun
★ 29k • written 8.7 years ago by
siajunren
• 0
0
votes
1
reply
1.4k
views
The cor and corp values in verboseScatterplot don't match with cor, corPvalueStudent results
WGCNA
wgcna
updated 8.7 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.7 years ago by
joseph
▴ 50
0
votes
17
replies
4.8k
views
Finding DMRs using dmrFinder in bsseq
bsseq R package
8.7 years ago
Maria
• 0
0
votes
3
replies
1.4k
views
DEXSeq help - error: model matrix not full rank
dexseq
8.7 years ago
greenhawmatt
• 0
1
vote
1
reply
1.3k
views
Can I apply WGCNA on unmatched time point microarray data and clinical data?
WGCNA
8.7 years ago
joseph
▴ 50
0
votes
1
reply
1.3k
views
intersect ranges from a GAlignment object with a GRangesList
intersect
grangeslist
galignment
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
ccanchaya
• 0
0
votes
2
replies
1.9k
views
ID unmatched in pathview
pathview
updated 8.7 years ago by
Mataivic
• 0 • written 8.7 years ago by
joseph
▴ 50
0
votes
0
replies
1.0k
views
How to combine CGHcall objects
cghcall
r
cgh
copy number
8.7 years ago
kitcurtius
• 0
0
votes
1
reply
2.2k
views
bug limma / illuminaio? Otherwise small feature request...
limma
illuminaio
idat
gzip
updated 8.7 years ago by
Matthew Ritchie
▴ 1000 • written 8.7 years ago by
Guido Hooiveld
★ 4.1k
46,730 results • Page
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