0
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0
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1.1k
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What's new in epiviz
epivizr metavizr
8.6 years ago Hector Corrada Bravo ▴ 60
2
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5
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NGS with summarizeOverlaps and SAM files
genomicalignments
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
0
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6
replies
4.2k
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difference in detection p-values from Minfi vs. GenomeStudio
minfi genomestudio methylation
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 40
0
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2
replies
1.5k
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beadsummary example- Analysing data from GEO
beadarray
8.7 years ago • updated 8.6 years ago anna.katsiki • 0
0
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5
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2.8k
views
normalization factors for ChIP/RNA-IP-seq data
edgeR DESeq edgeR DESeq
updated 8.6 years ago by • 0 • written 14.0 years ago by ▴ 370
0
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1
reply
1.4k
views
intansv - problem reading vcf output from delly ver 0.6.7
intansv
updated 8.6 years ago by • 0 • written 10.4 years ago by • 0
0
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7
replies
4.0k
views
Is anyone able to explain the statistics behind the dmpFinder function in minfi package?
minfi methylation dmpfinder limma
updated 8.6 years ago by • 0 • written 9.3 years ago by ▴ 20
3
votes
9
replies
2.5k
views
Skip estimateDispersions() DESeq2
deseq2 estimatedispersions
updated 8.6 years ago by • 0 • written 9.5 years ago by • 0
0
votes
6
replies
2.2k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 8.6 years ago by • 0 • written 8.9 years ago by ▴ 10
0
votes
3
replies
2.1k
views
Using Combat function of SVA to remove known batch effect and using the result for down-stream analysis
sva batch effect deseq2 edgeR
updated 8.6 years ago by ★ 29k • written 8.6 years ago by ▴ 10
0
votes
0
replies
1.8k
views
Can't get the lumi and methylumi packages to work.
lumi methylumi
8.6 years ago gitteba • 0
1
vote
3
replies
4.0k
views
Meaning of multiple coef in topTable, limma.
toptable coef
8.7 years ago • updated 8.6 years ago zhang.jianhai ▴ 10
4
votes
9
replies
2.9k
views
keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
ensdb.hsapiens.v75 ensembldb keys
updated 8.6 years ago by ★ 2.1k • written 8.6 years ago by ▴ 680
0
votes
0
replies
2.0k
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News: Pathview Web server published in NAR
pathway analysis visualization data integration omics pathview News
8.6 years ago Luo Weijun ★ 1.6k
0
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0
replies
2.1k
views
Problem with Bioconductor muscle package; cannot write results to disk
software error muscle
8.6 years ago catfish • 0
1
vote
0
replies
2.3k
views
Problem about module preservation statistics in WGCNA software
rnaseq tcga wgcna
8.7 years ago • updated 8.6 years ago panagiotis.mokos ▴ 40
3
votes
10
replies
2.7k
views
recount counts in the example experiment
recount
updated 8.6 years ago by ★ 1.1k • written 8.6 years ago by 43k
0
votes
2
replies
2.1k
views
read.maimages(targets, source="genepix") Error in `[.data.frame`(obj, , columns[[a]]) : undefined columns selected
bioconductor limma agilent microarrays
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
0
votes
1
reply
1.4k
views
installing getgo package
rnaseq goseq package installation
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
0
votes
1
reply
1.5k
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 60
1
vote
4
replies
4.5k
views
DESeq2 time-series data of multiple treatments with common time 0
deseq2 multiple time points multiple treatments
updated 8.6 years ago by 43k • written 8.6 years ago by • 0
2
votes
2
replies
1.4k
views
check splice isoforms
DESeq2 tximport
updated 8.6 years ago by 43k • written 8.6 years ago by • 0
3
votes
5
replies
2.3k
views
CNV parameter not working - MEDIPS
medips medip-seq error lukas
updated 8.6 years ago by ▴ 280 • written 8.6 years ago by • 0
0
votes
5
replies
3.0k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts SAM htseqcounts
updated 2.5 years ago by ▴ 450 • written 8.6 years ago by • 0
0
votes
1
reply
930
views
binnedaverage - is it possible to add an na.rm option?
genomicranges
updated 8.6 years ago by 16k • written 8.6 years ago by ▴ 740
0
votes
3
replies
2.6k
views
Trouble installing splatter
installation splatter
8.6 years ago luke.zappia ▴ 50
1
vote
1
reply
1.2k
views
Error with mappability argument
chipenrich
updated 8.6 years ago by ▴ 140 • written 8.6 years ago by • 0
0
votes
7
replies
8.0k
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DESeq2 DESeqDataSetFromTximport design formula
deseq2
updated 8.6 years ago by ▴ 130 • written 8.6 years ago by • 0
12
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6
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2.1k
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Testing for DE genes
affymetrix microarrays limma differential gene expression
updated 8.6 years ago by ★ 29k • written 8.6 years ago by ▴ 10
0
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0
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Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
biostatistics genetics Job
8.6 years ago hong.lee • 0
1
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0
replies
1.2k
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Bioconductor for predicting transcription factors from a gene list?
transcription transcriptdb
8.6 years ago hkarakurt ▴ 20
5
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4
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1.8k
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Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 8.6 years ago by • 0 • written 8.6 years ago by ▴ 40
4
votes
2
replies
2.2k
views
Help: extract counts from RNA-seq .bam/.bai files
counts edger
updated 8.6 years ago by ★ 29k • written 8.6 years ago by ▴ 80
1
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2
replies
1.8k
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plotRLE not working in scater
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8.6 years ago ian.oslo • 0
3
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3
replies
1.9k
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 8.6 years ago by ▴ 150 • written 8.6 years ago by ▴ 20
0
votes
3
replies
3.9k
views
DESeq2 independent filtering not working
deseq2 independent filtering cookscutoff
8.6 years ago tamsyn.derrick • 0
1
vote
3
replies
2.1k
views
Three factor model matrix, contrasts with interactions - DESeq2 / edgeR
deseq2 edgeR multifactorial design limma voom
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 150
0
votes
5
replies
3.7k
views
reactome.db installation problem
reactome.db bioclite
8.6 years ago Jan-Jaap • 0
1
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1
reply
1.0k
views
Diff. gene expression analysis by EdgeR
design and contrast matrix
8.6 years ago johan.vanongeval • 0
1
vote
2
replies
1.6k
views
Diffbind results - non uniform width
diffbind dba.count
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by ▴ 70
2
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6
replies
3.7k
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DiffBind dba.report() output: Is "concentration" normalized?
DiffBind
updated 4.8 years ago by ★ 5.2k • written 8.6 years ago by • 0
0
votes
2
replies
2.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation illumina EPIC methylationepic idat
updated 8.6 years ago by ★ 4.1k • written 8.6 years ago by • 0
0
votes
2
replies
1.5k
views
Agilent data normalization
limma
8.6 years ago mona.salehinasab • 0
2
votes
5
replies
4.4k
views
unable to get tximport to work on data from kallisto
tximport kallisto
updated 8.6 years ago by ★ 13k • written 8.6 years ago by ▴ 10
0
votes
4
replies
4.1k
views
DESeq2 extracting results: resultsNames does not show the expected output
deseq2 rnaseq resultsnames
8.7 years ago • updated 8.6 years ago zeynep.nenseth • 0
1
vote
6
replies
1.7k
views
Clarification requested for the RNAseq Gene workflow document
deseq2 rnaseq
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 10
2
votes
1
reply
2.8k
views
Limma: difference between groups of paired data
limma paired analysis limma
updated 3.8 years ago by • 0 • written 8.6 years ago by ▴ 10
5
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13
replies
7.7k
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P values from Deseq Analysis
deseq
8.7 years ago • updated 8.6 years ago Shrikant Pawar • 0
5
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4
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3.2k
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Fundamental questions about DESeq2 and RUVs in targeted gene set of 500
deseq2 ruvseq
updated 8.6 years ago by ▴ 980 • written 8.6 years ago by ▴ 10
0
votes
1
reply
1.6k
views
Change DEXSeq plot: Intron length/width and genes from - strand
rnaseq r dexseq visualization
8.6 years ago aleipz • 0
46,702 results • Page 332 of 935
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
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