Showing : Bioclite • reset
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Problem with installing "biocLite" using R4.2.0
biocLite
updated 2.1 years ago by ▴ 730 • written 2.1 years ago by • 0
1
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1
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1.7k
views
Problem with installing "biocLite" and "Monocle" with R 4.2.0
biocLite
updated 2.1 years ago by ★ 6.5k • written 2.1 years ago by • 0
3
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2
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17k
views
biocLite R Version
biocLite
updated 3.7 years ago by 700 • written 3.7 years ago by • 0
1
vote
2
replies
3.6k
views
BiocLite installation issues
BiocLite
updated 3.8 years ago by ★ 3.9k • written 3.8 years ago by ▴ 10
0
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1
reply
1.0k
views
I have installed bioconductor, R still asks me to install it
bioconductor biocLite GEOquery package
updated 4.4 years ago by ★ 13k • written 4.4 years ago by • 0
6
votes
3
replies
12k
views
Why package "BiocLite" is not available (for R version 3.6.1)
biocLite
updated 4.6 years ago by 3.9k • written 4.6 years ago by • 0
1
vote
3
replies
2.1k
views
update all/some/none how to set default to "update all"
biocLite update all default ask
updated 5.3 years ago by ▴ 30 • written 5.3 years ago by ▴ 10
5
votes
11
replies
2.8k
views
Error while installing Phyloseq using biocLite
bioclite phyloseq install error
5.7 years ago khp ▴ 30
2
votes
2
replies
1.1k
views
biocLite doesn't work
bioconductor bioclite
updated 5.7 years ago by 3.9k • written 5.7 years ago by • 0
5
votes
5
replies
2.2k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 120
1
vote
4
replies
1.9k
views
Problem installing Bioconductor
biocLite
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
1
vote
2
replies
1.9k
views
Trouble Installing Bioconductor Basic Packages
R bioclite installation problem linuxmint virtualbox
updated 5.8 years ago by 66k • written 5.8 years ago by • 0
0
votes
2
replies
1.5k
views
Unable to install Bioconductor packages following R upgrade to 3.5.1
bioclite bioconductor
updated 5.9 years ago by 25k • written 5.9 years ago by • 0
3
votes
5
replies
1.8k
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO bioclite R3.5 mac os x annotationdbi
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 30
1
vote
2
replies
3.6k
views
dyld: Library not loaded: @rpath/libc++abi.1.dylib
DESeq2 biocLite
updated 6.1 years ago by ★ 6.5k • written 6.1 years ago by • 0
1
vote
3
replies
1.5k
views
Error biocLite() newest version of ChAMP
R bioclite champ
6.2 years ago rosa_hegi ▴ 10
0
votes
2
replies
2.0k
views
Issues installing packages miniconda environment
bioclite deseq2 miniconda packages
6.3 years ago cpat • 0
0
votes
4
replies
2.7k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 6.3 years ago by ★ 1.3k • written 6.7 years ago by ▴ 70
6
votes
2
replies
1.7k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 6.3 years ago by ★ 6.5k • written 6.3 years ago by ▴ 10
0
votes
9
replies
3.5k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte tximportData
updated 6.4 years ago by ▴ 80 • written 8.0 years ago by ▴ 40
1
vote
1
reply
3.7k
views
status was 'Couldn't connect to server': bioClite
bioclite
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
0
votes
1
reply
1.4k
views
biocLite("lpsymphony") consistently fails with linker errors (can't find static libraries to link)
lpsymphony package installation bioclite
updated 6.5 years ago by ▴ 10 • written 6.6 years ago by • 0
0
votes
2
replies
980
views
Predefine default siteRepos for biocLite
biocinstaller bioclite
6.6 years ago Martin Marcher • 0
0
votes
4
replies
1.4k
views
How could I upgrade 191 old packages in my directory?
bioclite
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
0
votes
2
replies
2.9k
views
Problem using biocLite() to update packages
biocLite BiocInstaller variantannotation
updated 6.6 years ago by 66k • written 6.6 years ago by ★ 2.0k
2
votes
5
replies
1.5k
views
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioconductor bioclite
updated 6.6 years ago by 3.9k • written 6.6 years ago by ▴ 10
0
votes
2
replies
1.4k
views
problem in installing bioClite
installation problem biocLite
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
6
votes
8
replies
7.9k
views
Problem installing BiocGenerics
software error BioGenerics bioclite
6.7 years ago p.janitza ▴ 50
0
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2
replies
1.8k
views
How to permanently add custom repositories to BiocLite
bioclite repository repos
6.7 years ago arnau.bria • 0
4
votes
4
replies
7.8k
views
Problems install R XML package on CentOS 7
r packages centos7 bioclite libxml2
updated 6.8 years ago by ▴ 120 • written 6.8 years ago by ▴ 10
0
votes
2
replies
6.2k
views
Unable to install any bioconductor packages
R biocinstaller bioclite package installation
6.8 years ago sebastien200109 • 0
0
votes
1
reply
1.2k
views
Cannot load bioclite packages
bioclite
updated 6.9 years ago by 25k • written 6.9 years ago by • 0
0
votes
4
replies
1.5k
views
biocLITE annotation Rstudio
annotation bioclite
updated 6.9 years ago by 66k • written 6.9 years ago by • 0
0
votes
0
replies
879
views
using BiocLite() on Ubuntu Xenial with its default R 3.2.3 release
bioclite
6.9 years ago howarth.mailing.lists ▴ 10
0
votes
3
replies
1.7k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 7.0 years ago by 66k • written 7.0 years ago by • 0
0
votes
5
replies
2.7k
views
reactome.db installation problem
reactome.db bioclite
7.1 years ago Jan-Jaap • 0
0
votes
4
replies
2.1k
views
Bioconductor - not updating
bioconductor R bioclite
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
0
votes
1
reply
1.4k
views
Package dependency GenomicFeatures is installed but cannot be found
genomicfeatures bioclite package installation
7.2 years ago cqe20 • 0
0
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0
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894
views
HowTo: install just html help on top of existing packages
bioclite package installation update
7.3 years ago Malcolm Cook ★ 1.6k
0
votes
4
replies
4.7k
views
Problems with RSQLite compilation
rsqlite bioconductor bioclite rcpp.h
updated 7.4 years ago by 25k • written 7.4 years ago by • 0
2
votes
6
replies
1.5k
views
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
bioclite bioconductor summarizeoverlaps genomicfeatures genomicalignments
updated 7.5 years ago by 42k • written 7.5 years ago by • 0
2
votes
1
reply
4.6k
views
Upgrade to Bioconductor 3.4 - problems with R
r update upgrade bioclite
updated 7.6 years ago by 66k • written 7.6 years ago by • 0
0
votes
1
reply
716
views
News: Bioc 'devel' repository temporarily not available
biocLIte News
7.7 years ago Martin Morgan 25k
9
votes
6
replies
9.5k
views
What's the deal with biocLite's "Update all/some/none? [a/s/n]"?
bioclite
7.9 years ago kjo ▴ 70
0
votes
1
reply
1.4k
views
problem installing biocLite, MotifDb.
motifdb bioclite
updated 8.0 years ago by 16k • written 8.0 years ago by • 0
0
votes
2
replies
1.2k
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite biocupgrade
updated 8.1 years ago by 25k • written 8.1 years ago by • 0
8
votes
4
replies
7.0k
views
Can't upgrade to Bioconductor 3.3?
bioconductor biocupgrade upgrade update bioclite
8.1 years ago enricoferrero ▴ 660
0
votes
3
replies
1.3k
views
Prevent biocLite() from asking to update packages every time it's used
bioclite package installation package updates
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 40
0
votes
1
reply
2.4k
views
Bioconductor installation problem
installation biocLite
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 10
2
votes
6
replies
36k
views
Installing Bioclite.R Package
Bioclite install
8.5 years ago louiseapps2 • 0
50 results • Page 1 of 1
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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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Popular Question to Jonathan ▴ 10
Popular Question to Frederico Moraes Ferreira ▴ 100
Popular Question to richardallenfriedmanbrooklyn ▴ 20
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