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News: European Bioconductor Conference 2023 planning
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News: Join the Technical Advisory Board
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2.4 years ago Maria Doyle ▴ 100
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News: Final List of Deprecated Package Bioc 3.9
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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2.4 years ago Maria Doyle ▴ 100
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News: Registrations are now open for BioC Asia 2022
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3.0 years ago • updated 2.9 years ago Peter Hickey ▴ 760
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: New Bioconductor Community Advisory Board Members for 2021
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4.5 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board
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News: Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
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4.6 years ago Matthew Ritchie ▴ 1000
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News: Community engagement and outreach award
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News: SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
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4.9 years ago shepherl 4.2k
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 4.9 years ago by 43k • written 4.9 years ago by • 0
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News: Final List of Deprecated Packages for Bioc3.12
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5.0 years ago • updated 4.9 years ago shepherl 4.2k
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News: BridgeDbR devel package upgraded to BridgeDb 3
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4.9 years ago egon.willighagen ▴ 10
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News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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4.9 years ago kayla.interdonato ▴ 160
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5.0 years ago Laurent Gatto 1.6k
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News: List of Deprecated Packages for Bioc3.12
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5.1 years ago • updated 5.0 years ago shepherl 4.2k
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News: New Package Submission Deadline for Bioc Release 3.12
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News: Bioconductor Release 3.12 Schedule Posted
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5.0 years ago shepherl 4.2k
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News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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5.1 years ago Johannes Rainer ★ 2.1k
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News: Ensembl 101 hase been released
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News: James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
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News: New Package Submission Workflow Updates!
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5.5 years ago • updated 5.3 years ago shepherl 4.2k
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5.3 years ago shepherl 4.2k
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News: Award Nomination Deadline Monday June 15th!
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5.3 years ago shepherl 4.2k
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News: List of Deprecated Packages for Bioc3.12
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5.3 years ago shepherl 4.2k
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News: New Package Bioconductor Award
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5.3 years ago shepherl 4.2k
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News: Support Site Bioconductor Award
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5.3 years ago shepherl 4.2k
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News: Bioc2020 - Virtual Conference Registration
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5.3 years ago shepherl 4.2k
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News: Updated annotation packages
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5.3 years ago kayla.interdonato ▴ 160
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News: Nominations for Bioconductor Awards!
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5.4 years ago • updated 5.3 years ago shepherl 4.2k
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News: Single Package Builder / New Package Submission
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5.3 years ago shepherl 4.2k
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News: Bioconductor Technical Advisory Board Nominees, 2020
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written 5.3 years ago by 25k
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News: Public Calendar of Events
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5.3 years ago shepherl 4.2k
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News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
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5.4 years ago Johannes Rainer ★ 2.1k
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News: Issues with annotation packages
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5.4 years ago kayla.interdonato ▴ 160
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News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 5.4 years ago by ▴ 160 • written 5.5 years ago by 4.2k
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News: Bioconductor 3.11 OrgDb and TxDb packages now available
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5.4 years ago kayla.interdonato ▴ 160
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News: Ensembl 100 has been released
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5.4 years ago Thomas Maurel ▴ 800
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News: Bioconductor 3.11 is Released!
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5.4 years ago shepherl 4.2k
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News: BridgeDb build fails due to website unavailability
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5.8 years ago • updated 5.4 years ago egon.willighagen ▴ 10
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News: Import Deadlines for RELEASE 3.11
release devel deadline bioconductor News
5.4 years ago shepherl 4.2k
10
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News: Professor James Taylor
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5.5 years ago Martin Morgan 25k
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News: Last Day to Submit New Packages for Bioconductor Release 3.11
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5.5 years ago shepherl 4.2k
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News: Bioconductor Community Advisory Board Members
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5.5 years ago Matthew Ritchie ▴ 1000
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News: New Package and New Docker Image Submission Deadline for Bioc Release 3.11
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5.5 years ago shepherl 4.2k
345 results • Page 1 of 7
Recent ...
Replies
Answer: DESeq2 interactions by prominentmirabel • 0
Good experimental setup! For HP vs CNP, try results(dds_int, contrast=list("pollutionpolluted", "temphot", "pollutionpolluted.temphot")). T…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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