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News: European Bioconductor Conference 2023 planning
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News: Join the Technical Advisory Board
Bioconductor News Organization
2.3 years ago Maria Doyle ▴ 100
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News: Final List of Deprecated Package Bioc 3.9
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written 6.4 years ago by 4.2k
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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2.4 years ago Maria Doyle ▴ 100
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News: Registrations are now open for BioC Asia 2022
Asia BioCAsia Conferences Events News
2.9 years ago • updated 2.8 years ago Peter Hickey ▴ 760
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: New Bioconductor Community Advisory Board Members for 2021
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4.4 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board
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News: Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
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4.6 years ago Matthew Ritchie ▴ 1000
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News: Community engagement and outreach award
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written 5.2 years ago by 4.2k
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News: SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
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4.9 years ago shepherl 4.2k
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 4.8 years ago by 43k • written 4.9 years ago by • 0
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News: Final List of Deprecated Packages for Bioc3.12
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4.9 years ago shepherl 4.2k
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News: BridgeDbR devel package upgraded to BridgeDb 3
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4.9 years ago egon.willighagen ▴ 10
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News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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4.9 years ago kayla.interdonato ▴ 160
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News: Project-wide Code of Conduct statement for Bioconductor
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4.9 years ago Laurent Gatto 1.6k
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News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
5.0 years ago • updated 4.9 years ago shepherl 4.2k
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News: New Package Submission Deadline for Bioc Release 3.12
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4.9 years ago shepherl 4.2k
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News: Bioconductor Release 3.12 Schedule Posted
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5.0 years ago shepherl 4.2k
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News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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5.0 years ago Johannes Rainer ★ 2.1k
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News: Ensembl 101 hase been released
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5.0 years ago mchakiachvili ▴ 20
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News: James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
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5.1 years ago Kasper Daniel Hansen ★ 6.5k
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News: New Package Submission Workflow Updates!
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News: Bioc2020 - Call for BOF/HAK/FAQ Sections
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5.4 years ago • updated 5.2 years ago shepherl 4.2k
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News: Bioc2020 - Call for BOF/HAK/FAQ Sections Still Open
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5.2 years ago shepherl 4.2k
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News: Award Nomination Deadline Monday June 15th!
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5.2 years ago shepherl 4.2k
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News: Scientific or Informatic Technology Advancement Award!
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5.2 years ago shepherl 4.2k
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News: Long-term contribution award
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5.2 years ago shepherl 4.2k
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News: Documentation Bioconductor Award
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5.2 years ago shepherl 4.2k
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News: List of Deprecated Packages for Bioc3.12
deprecated experiment data software annotation News
5.2 years ago shepherl 4.2k
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News: New Package Bioconductor Award
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5.2 years ago shepherl 4.2k
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News: Support Site Bioconductor Award
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5.2 years ago shepherl 4.2k
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News: Bioc2020 - Virtual Conference Registration
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5.3 years ago shepherl 4.2k
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News: Updated annotation packages
annotation news News
5.3 years ago kayla.interdonato ▴ 160
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News: Nominations for Bioconductor Awards!
Bioc2020 Bioconductor Awards Recognition News
5.4 years ago • updated 5.3 years ago shepherl 4.2k
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News: Single Package Builder / New Package Submission
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5.3 years ago shepherl 4.2k
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News: Bioconductor Technical Advisory Board Nominees, 2020
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written 5.3 years ago by 25k
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News: Public Calendar of Events
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5.3 years ago shepherl 4.2k
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News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl annotation ensembldb News
5.3 years ago Johannes Rainer ★ 2.1k
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News: Issues with annotation packages
annotation news release News
5.3 years ago kayla.interdonato ▴ 160
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3
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News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 5.3 years ago by ▴ 160 • written 5.4 years ago by 4.2k
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News: Bioconductor 3.11 OrgDb and TxDb packages now available
annotation news release News
5.3 years ago kayla.interdonato ▴ 160
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1.1k
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News: Ensembl 100 has been released
biomart ensembl e100 mart news News
5.3 years ago Thomas Maurel ▴ 800
4
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1.1k
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News: Bioconductor 3.11 is Released!
software bioconductor release packages News
5.4 years ago shepherl 4.2k
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4
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1.6k
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News: BridgeDb build fails due to website unavailability
bridgedbr News
5.7 years ago • updated 5.4 years ago egon.willighagen ▴ 10
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1.2k
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News: Import Deadlines for RELEASE 3.11
release devel deadline bioconductor News
5.4 years ago shepherl 4.2k
10
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0
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3.1k
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News: Professor James Taylor
in memoriam News
5.4 years ago Martin Morgan 25k
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0
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1.2k
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News: Last Day to Submit New Packages for Bioconductor Release 3.11
deadline new submission bioconductor release News
5.4 years ago shepherl 4.2k
2
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1.2k
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News: Bioconductor Community Advisory Board Members
news bioconductor oversight community News
5.4 years ago Matthew Ritchie ▴ 1000
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1.5k
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News: New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release package submission docker deadline News
5.5 years ago • updated 5.4 years ago shepherl 4.2k
345 results • Page 1 of 7
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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design by Gordon Smyth 52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design by James W. MacDonald 68k
You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…
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Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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