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News: European Bioconductor Conference 2023 planning
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News: Join the Technical Advisory Board
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18 months ago Maria Doyle ▴ 90
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News: Final List of Deprecated Package Bioc 3.9
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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19 months ago Maria Doyle ▴ 90
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News: Registrations are now open for BioC Asia 2022
Asia BioCAsia Conferences Events News
2.1 years ago • updated 2.0 years ago Peter Hickey ▴ 740
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: New Bioconductor Community Advisory Board Members for 2021
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3.6 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board
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updated 3.7 years ago by • 0 • written 3.8 years ago by ▴ 1000
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News: Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
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3.8 years ago Matthew Ritchie ▴ 1000
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News: Community engagement and outreach award
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News: SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
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4.1 years ago shepherl 4.1k
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 4.0 years ago by 42k • written 4.1 years ago by • 0
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News: Final List of Deprecated Packages for Bioc3.12
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4.1 years ago shepherl 4.1k
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News: BridgeDbR devel package upgraded to BridgeDb 3
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4.1 years ago egon.willighagen ▴ 10
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News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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4.1 years ago kayla.interdonato ▴ 160
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News: Project-wide Code of Conduct statement for Bioconductor
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4.1 years ago Laurent Gatto 1.6k
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News: List of Deprecated Packages for Bioc3.12
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4.2 years ago • updated 4.1 years ago shepherl 4.1k
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News: New Package Submission Deadline for Bioc Release 3.12
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4.1 years ago shepherl 4.1k
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News: Bioconductor Release 3.12 Schedule Posted
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4.2 years ago shepherl 4.1k
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News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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4.2 years ago Johannes Rainer ★ 2.1k
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News: Ensembl 101 hase been released
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4.2 years ago mchakiachvili ▴ 20
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News: James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
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4.3 years ago Kasper Daniel Hansen ★ 6.5k
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News: New Package Submission Workflow Updates!
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News: Bioc2020 - Call for BOF/HAK/FAQ Sections
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4.6 years ago • updated 4.4 years ago shepherl 4.1k
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News: Bioc2020 - Call for BOF/HAK/FAQ Sections Still Open
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4.4 years ago shepherl 4.1k
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News: Award Nomination Deadline Monday June 15th!
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4.4 years ago shepherl 4.1k
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4.4 years ago shepherl 4.1k
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News: Long-term contribution award
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4.4 years ago shepherl 4.1k
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News: Documentation Bioconductor Award
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4.4 years ago shepherl 4.1k
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News: List of Deprecated Packages for Bioc3.12
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4.4 years ago shepherl 4.1k
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News: New Package Bioconductor Award
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4.4 years ago shepherl 4.1k
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News: Support Site Bioconductor Award
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4.5 years ago shepherl 4.1k
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News: Bioc2020 - Virtual Conference Registration
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4.5 years ago shepherl 4.1k
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News: Updated annotation packages
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4.5 years ago kayla.interdonato ▴ 160
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News: Nominations for Bioconductor Awards!
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4.6 years ago • updated 4.5 years ago shepherl 4.1k
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News: Single Package Builder / New Package Submission
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4.5 years ago shepherl 4.1k
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News: Bioconductor Technical Advisory Board Nominees, 2020
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written 4.5 years ago by 25k
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News: Public Calendar of Events
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4.5 years ago shepherl 4.1k
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News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
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4.5 years ago Johannes Rainer ★ 2.1k
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News: Issues with annotation packages
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4.5 years ago kayla.interdonato ▴ 160
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News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 4.5 years ago by ▴ 160 • written 4.6 years ago by 4.1k
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News: Bioconductor 3.11 OrgDb and TxDb packages now available
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4.5 years ago kayla.interdonato ▴ 160
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928
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News: Ensembl 100 has been released
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4.6 years ago Thomas Maurel ▴ 800
4
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947
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News: Bioconductor 3.11 is Released!
software bioconductor release packages News
4.6 years ago shepherl 4.1k
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News: BridgeDb build fails due to website unavailability
bridgedbr News
5.0 years ago • updated 4.6 years ago egon.willighagen ▴ 10
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News: Import Deadlines for RELEASE 3.11
release devel deadline bioconductor News
4.6 years ago shepherl 4.1k
10
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2.9k
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News: Professor James Taylor
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4.6 years ago Martin Morgan 25k
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News: Last Day to Submit New Packages for Bioconductor Release 3.11
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4.6 years ago shepherl 4.1k
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News: Bioconductor Community Advisory Board Members
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4.6 years ago Matthew Ritchie ▴ 1000
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News: New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release package submission docker deadline News
4.7 years ago • updated 4.6 years ago shepherl 4.1k
50 results • Page 1 of 1
Recent ...
Replies
Comment: [How to construct a model.matrix ] by kyj2226 • 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Votes
Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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