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snp
•
reset
0
votes
2
replies
2.6k
views
How to get the rsID of 4 million SNPA
ensembldb
SNP
SNPData
genomes
written 2.2 years ago by
Weiqiong
• 0
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 9 months ago by
James W. MacDonald
65k • written 3.7 years ago by
Mahan
• 0
0
votes
3
replies
719
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt
SNP
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Damien
• 0
0
votes
0
replies
493
views
Human to mouse SNP conversion
liftOver
SNP
GWASTools
13 months ago
bonheur
• 0
0
votes
4
replies
761
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium
SNP
gwas
GWASdata
ldblock
13 months ago
Weiqiong
• 0
0
votes
1
reply
881
views
How to remove INDELS/SNPs from a bed file
SNP
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
Cian
• 0
0
votes
0
replies
477
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP
ExomeSeqData
snapcount
SNAData
SNPRelate
18 months ago
m610110001
• 0
0
votes
0
replies
659
views
ACMG Annotations for Variants in R
ACMG
SNP
22 months ago
hamza_karakurt
▴ 50
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate
SNP
GWASTools
Annotation
GWASdata
updated 2.3 years ago by
Stephanie M. Gogarten
▴ 870 • written 2.4 years ago by
Adrián
• 0
0
votes
1
reply
810
views
Get CHR & POS for a list of SNP rs ids (>1M)
POS
CHR
SNP
rs
updated 2.6 years ago by
James W. MacDonald
65k • written 2.6 years ago by
Mahan
• 0
0
votes
0
replies
855
views
Reading Affymetrix Axiom files
affy
SNP
axiom
3.0 years ago
f.calboli
• 0
0
votes
0
replies
729
views
Extract flanking sequences SNP without reference genome
SNPData
snpStats
SNP
flankingsequences
3.1 years ago
Amber
• 0
6
votes
11
replies
1.7k
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r
biomart
SNP
annotation
HUGO
updated 3.7 years ago by
Mike Smith
★ 6.5k • written 3.7 years ago by
aroso491
• 0
2
votes
2
replies
2.5k
views
How to convert 1000 genomes VCF files to the format of traditional SNP array format?
SNP
1000genome
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
syrttgump
▴ 20
1
vote
2
replies
1.3k
views
TCGA MAF (Mutations) data
TCGA
MAF
GDC
snp
mutations
updated 5.0 years ago by
Sean Davis
21k • written 5.0 years ago by
mario.zanfardino
▴ 160
0
votes
0
replies
815
views
genetic and linkage maps construction
genetic map
linkage maps
SNP
assembly
GBS
5.3 years ago
mictadlo
▴ 10
0
votes
0
replies
745
views
R: estimating error rate of replicated samples
R
SNP
genotyping
genetic diversity
5.3 years ago
meriam.nef
• 0
0
votes
0
replies
1.5k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
pltbiotech_tkarthi
• 0
0
votes
11
replies
3.5k
views
SNP6 data to VCF
SNP
oligo
ASSIGN
SNP
oligo
ASSIGN
updated 5.7 years ago by
giulio.genovese
• 0 • written 12.2 years ago by
Sean Davis
21k
0
votes
1
reply
1.2k
views
Finding/Understanding Affy 6.0 Annotation File
affy
affymetrix
microarray
SNP
5.7 years ago
CantExitVIM
▴ 10
3
votes
5
replies
1.6k
views
Understanding PureCN and its germline SNPs
PureCN
germline
SNP
updated 5.9 years ago by
kakbrus
• 0 • written 6.1 years ago by
twtoal
▴ 10
0
votes
1
reply
1.8k
views
VCF file non-SNP germline mutations
PureCN
VCF
SNP
updated 6.0 years ago by
markus.riester
▴ 130 • written 6.0 years ago by
twtoal
▴ 10
0
votes
3
replies
2.0k
views
dbSNP - getting details of Pubmed ID for a SNP
SNP
SNP
updated 6.1 years ago by
hsiaoyi0504
• 0 • written 14.3 years ago by
Paul Evans
▴ 180
0
votes
1
reply
1.3k
views
How to draw venn diagram with four CSV files
R
SNP
venn diagram
updated 6.3 years ago by
James W. MacDonald
65k • written 6.3 years ago by
kwangseob
• 0
0
votes
0
replies
824
views
Wtccc sanger dataset
SNP
6.3 years ago
hadeel.alzoubi
• 0
0
votes
1
reply
1.1k
views
How to map a SNP to all genes within 50kb (upstream or downstream) of the SNP?
annotation
R
snp
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
arbet003
▴ 10
0
votes
0
replies
898
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
6.8 years ago
Ellen O
• 0
2
votes
1
reply
1.3k
views
GenomicAlignments/access correct bp positions near indels
genomicranges
genomicalignments
snp
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
Daniel.Berner@unibas.ch
▴ 90
3
votes
4
replies
1.5k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs
SNP
dbsnp
7.2 years ago
Ramiro Magno
▴ 100
1
vote
2
replies
3.5k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment
SNP
dnasequence
7.2 years ago
lordbleys
• 0
3
votes
3
replies
1.9k
views
Retrieve SNP flanking sequences in biomaRt
biomart
snp
upstream_flank
downstream_flank
updated 7.4 years ago by
Mike Smith
★ 6.5k • written 7.4 years ago by
anajacintafernandes
▴ 20
0
votes
2
replies
1.6k
views
injectSNPS only for common variants
snp
snplocs
updated 7.5 years ago by
Robert Castelo
★ 3.3k • written 7.5 years ago by
arubio
• 0
0
votes
3
replies
2.3k
views
Gramene now available via biomaRt
SNP
Transcription
biomaRt
Vega
SNP
Transcription
biomaRt
Vega
updated 7.5 years ago by
maialiaeb
• 0 • written 17.2 years ago by
Steffen Durinck
▴ 580
0
votes
0
replies
1.1k
views
vizualization of mutations
genomes
SNP
7.6 years ago
Bogdan
▴ 670
0
votes
0
replies
1.1k
views
Illumina Genotyping in parallel raise an error
crlmm
snp
illumina
7.8 years ago
nadne
▴ 10
1
vote
0
replies
2.1k
views
Job:
Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
rnaseq
snp
chipseq
Job
7.9 years ago
altuna akalin
▴ 20
0
votes
1
reply
1.3k
views
Error with FunciSNP
snp
R
gwastools
8.1 years ago • updated 8.0 years ago
musomilan
• 0
2
votes
3
replies
2.4k
views
ggbio circular plot
ggbio
SNP
granges
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
Marcin Grzybowski
• 0
5
votes
9
replies
4.2k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber
snp
affymetrix
8.4 years ago
KB
▴ 50
0
votes
1
reply
1.1k
views
Distance measure used by snpgdsPCA in SNPRelate
snp
clustering
8.5 years ago
mattcott
• 0
1
vote
2
replies
2.1k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing
snp
updated 8.6 years ago by
Jan Oosting
▴ 20 • written 8.6 years ago by
markus.riester
• 0
0
votes
0
replies
1.1k
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
8.7 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
2
replies
3.8k
views
Bioconductor 2.12 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
Microarray
Coverage
Alignment
Annotation
GO
updated 8.8 years ago by
marksteve952
• 0 • written 11.1 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
6
replies
2.2k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP
Cancer
SNPlocs
SNP
Cancer
SNPlocs
updated 8.8 years ago by
genefan
• 0 • written 14.9 years ago by
Hervé Pagès
16k
0
votes
1
reply
1.3k
views
trouble with predictCoding( function
snp
variantannotation
predict coding
8.9 years ago
vakul.mohanty
▴ 20
0
votes
2
replies
3.3k
views
Pipeline for analyzing CNV (SNP array) level 3 from TCGA
SNP
CNV
TCGA
9.0 years ago
NS
▴ 60
0
votes
2
replies
4.8k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP
biomart
archive
grch37
9.1 years ago
mrprao
• 0
0
votes
0
replies
1.4k
views
DNAcopy default settings and SNP6.0 arrays
SNP
DNAcopy
SNP6.0
CNV
9.3 years ago
giovanni.dario
• 0
1
vote
6
replies
2.3k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs
snp
9.4 years ago
garrisrg
▴ 10
1
vote
2
replies
1.7k
views
biomaRt error message
biomaRt
snp
updated 9.5 years ago by
Thomas Maurel
▴ 800 • written 9.5 years ago by
Ting
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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