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772
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4
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9
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507
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Juan Higareda
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760
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8
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404
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7 weeks ago • updated 20 days ago
Kim
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15
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23
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2.1k
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0
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4
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269
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4
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537
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5
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533
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2
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4
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394
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70
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120
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60
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10
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2
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755
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5
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6
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2.8k
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4
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3
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3
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written 3.6 years ago by
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80
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9
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written 5.2 years ago by
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50
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190
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5
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Henrik Bengtsson
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Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint
Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★
4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★
4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
•
0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running:
```
counts <- featureCounts(
…
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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jovel_juan
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enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
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