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1.5k
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R package to change protein *.msf file to any readable file
Proteome
ProteomicsWorkflow
proteomics
updated 5.2 years ago by
swbarnes2
★ 1.4k • written 5.2 years ago by
yueli7
▴ 20
0
votes
2
replies
1.9k
views
ggbio autoplot() error "object of type 'symbol' is not subsettable"
ggbio
5.2 years ago
Andrew
• 0
0
votes
1
reply
1.2k
views
Installation of pcaGoPromoter fails
pcaGoPromoter
Bioconductor
updated 5.2 years ago by
Guido Hooiveld
★ 4.1k • written 5.2 years ago by
raven
• 0
0
votes
1
reply
811
views
studying periodicity among small number of gene transcripts
DiscoRhythm
updated 4.7 years ago by
matthew.carlucci
• 0 • written 5.2 years ago by
adR
▴ 40
9
votes
4
replies
1.7k
views
support for more genomes [igvR]
igvR
5.3 years ago • updated 5.2 years ago
Peng
▴ 20
0
votes
4
replies
2.0k
views
uniprot.ws select error
UniProt.ws
5.2 years ago
Apoorva
▴ 10
0
votes
0
replies
1.2k
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
5.2 years ago
Mike
▴ 10
0
votes
1
reply
2.6k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
ecg1g15
▴ 30
2
votes
4
replies
3.7k
views
Compare 3 RNASeq groups with no control in DESeq2
anova
RNASeqData
tukeyTest
DESeq2
5.2 years ago
ecg1g15
▴ 30
1
vote
1
reply
1.4k
views
Errors in installing RforProteomics package
error
RforProteomics
Install
updated 5.2 years ago by
Mike Smith
★ 6.6k • written 5.2 years ago by
Phoebe
• 0
0
votes
1
reply
986
views
a BioC/R package that display the genome sequence/ mRNA exons/protein domains
AnnotationHubData
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
Bogdan
▴ 670
0
votes
5
replies
2.1k
views
DiffBind:all samples have 0 counts for all genes.
DiffBind
Genrich
updated 2.6 years ago by
xm00262
• 0 • written 5.2 years ago by
peris_baba
• 0
0
votes
7
replies
3.7k
views
Cannot install ShortRead package
ShortRead
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
Bob
• 0
2
votes
7
replies
2.9k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC
annotation
rn6
updated 2.1 years ago by
Raghavaram
• 0 • written 5.4 years ago by
Frédéric Crémazy
• 0
20
votes
10
replies
22k
views
How do I merge a list of GRanges?
GenomicRanges
updated 4.0 years ago by
jon.klonowski
▴ 40 • written 9.6 years ago by
endrebak85
▴ 40
0
votes
0
replies
1.3k
views
Job:
Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R
statistics
pathview
singlecellRNA-Seq
5.2 years ago • updated 4.8 years ago
Luo Weijun
★ 1.6k
1
vote
3
replies
1.5k
views
Limma: Differential expression with two batch effects , location and batch.
duplicatecorrelation
BatchEffect
limma
corfit
updated 5.2 years ago by
Gordon Smyth
53k • written 5.2 years ago by
Katherine
• 0
2
votes
7
replies
3.7k
views
CRISPRseek Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") interpretation
CRISPRseek
5.2 years ago • updated 5.0 years ago
xenon
▴ 40
0
votes
5
replies
1.3k
views
DESeq function fast on laptop but very slow on server
DESeq2
5.2 years ago
Saroop
• 0
0
votes
1
reply
1.5k
views
Limma: Correct for location and batch effect
limma
BatchEffect
duplicatecorrelation
block
batch
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
Katherine
• 0
1
vote
2
replies
3.3k
views
Bioconductor install error
phyloseq
Bioconductor
5.2 years ago
Tess
• 0
1
vote
2
replies
1.5k
views
Analyzing publicly available DESeq2 normalized counts for differential expression
DifferentialExpression
DESeq2
Normalization
updated 5.2 years ago by
Michael Love
43k • written 5.2 years ago by
krovi138
• 0
0
votes
2
replies
2.2k
views
Use of RSEM counts in WGCNA
rsemmed
RSEM
WGCNA
5.2 years ago
harelarik
▴ 60
0
votes
1
reply
931
views
RNA gene expression data retrieval for breast cancer subtypes
RNASeqData
GenomeInfoDb
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
G.G.H.T.
• 0
0
votes
1
reply
1.3k
views
How can I download all supported species information table of STRINGdb V11
STRINGdb
STRING
updated 5.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 5.2 years ago by
Evan-GIBH
• 0
5
votes
2
replies
16k
views
How to remove dendrogram from pheatmaps?
pheatmapr
DESeq2
Bioconductor
updated 5.2 years ago by
Guido Hooiveld
★ 4.1k • written 5.2 years ago by
Khawlah
• 0
1
vote
21
replies
7.0k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 5.7 years ago by
Lucy
▴ 60
0
votes
1
reply
1.2k
views
two tracks have the same axis
plot
Gviz
5.2 years ago
腾
• 0
5
votes
6
replies
6.9k
views
Create count matrix with featureCounts for stranded as well as reversely stranded, singles as well as paired-end libraries
rsubread
updated 5.2 years ago by
bjwiley23
• 0 • written 7.8 years ago by
juls
• 0
0
votes
2
replies
1.8k
views
DEXSeq - what is the best way to filter out low expressed exons / genes?
dexseq
5.6 years ago • updated 5.2 years ago
aleksandar.baburski.g
• 0
0
votes
0
replies
842
views
when to use filter_by_cv() function from the lipidr package
Lipidomics
lipidr
lipi
5.2 years ago
eme
• 0
0
votes
0
replies
927
views
Is there currently something wrong with the rDGIdb API?
rDGIdb
5.2 years ago
mike-zx
• 0
0
votes
0
replies
1.2k
views
tissue specific differential expression using edgeR -- accounting for other effects in the model
edgeR
DifferentialExpression
5.2 years ago
Christy
• 0
0
votes
3
replies
3.2k
views
Pearson correlation between gene expression and phenotype
edgeR
RNASeq
updated 5.2 years ago by
Gordon Smyth
53k • written 5.2 years ago by
weichengz
▴ 10
2
votes
5
replies
4.2k
views
Error in lfcShrink
lfcShrink
DESeq2
updated 5.2 years ago by
tcalvo
▴ 100 • written 5.2 years ago by
Claudio Carril
• 0
1
vote
1
reply
2.0k
views
GenomicRanges equivalent to bedtools cluster
IRanges
GenomicRanges
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
kalamari
• 0
2
votes
3
replies
3.3k
views
Normalization for within-sample gene correlation
edgeR
Normalization
DESeq2
tpm
RNASeq
updated 5.2 years ago by
Gordon Smyth
53k • written 5.2 years ago by
tcalvo
▴ 100
0
votes
0
replies
909
views
Clusterprofiler - best practise for missing ids
ReactomePA
clusterProfiler
GeneSetEnrichment
5.2 years ago
paun_bio
• 0
2
votes
2
replies
2.1k
views
Treatment AND Sex in EdgeR
edgeR
updated 5.2 years ago by
Steve Lianoglou
★ 13k • written 5.2 years ago by
science555111
• 0
1
vote
3
replies
3.4k
views
Merging Neighboring Genomic Segments
Granges
GenomicRanges
5.2 years ago
rahnaman
▴ 10
7
votes
10
replies
7.6k
views
annotating gene for transcript type/biotype
annotation
homo.sapiens
updated 5.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
sjmonkley
▴ 40
0
votes
0
replies
1.5k
views
Job:
Data Scientist Proteomics (100%), Biozentrum, University of Basel, Switzerland
Switzerland
JobPosting
Basel
Proteomics
5.2 years ago
Robert Ivanek
▴ 750
0
votes
0
replies
1.3k
views
DECIPHER Probe Design Questions
DECIPHER
5.2 years ago
henry1995910343
• 0
0
votes
2
replies
1.1k
views
p adjusted value not available
StatisticalMethod
DESeq2
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
marie
• 0
0
votes
0
replies
943
views
don't get an output of wigtoRangedData's function HMMcopy Package for detect CNV
HMMcopy
DNAcopy
5.2 years ago
El
• 0
0
votes
0
replies
1.1k
views
flowCore - linear transformation
cytofWorkflow
cytofworkflow
flowCore
5.2 years ago
GFM
▴ 20
0
votes
2
replies
3.0k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 5.2 years ago by
Gordon Smyth
53k • written 5.2 years ago by
Jeff
▴ 20
1
vote
1
reply
1.0k
views
Fuzzy C means clustering
Mfuzz
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
syed.imtiazaziz
• 0
1
vote
3
replies
9.7k
views
problem in installing Bio conductor package
bioconductorpackages
Install
updated 23 months ago by
Guru
• 0 • written 5.2 years ago by
k200987
• 0
0
votes
3
replies
1.3k
views
DiffBind reporting error
DiffBind
updated 4.7 years ago by
Rory Stark
★ 5.2k • written 5.2 years ago by
Bei Jun
• 0
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