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2
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2.4k
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Problem when installing DESeq on MAC OS X
s4vectors mac os x deseq
updated 9.9 years ago by ★ 13k • written 9.9 years ago by • 0
2
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1
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Does order of removeBatchEffect() and DE subsetting matter for clustered heat map visualization?
rna-seq edgeR limma removebatcheffect() batch
updated 9.9 years ago by ★ 29k • written 9.9 years ago by ▴ 80
2
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DESeq2 model matrix error : Levels or combinations of levels without any samples have resulted in column(s) of zeros in the model matrix.
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9.9 years ago Raj • 0
1
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1
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Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz clustering bioinformatics proteomics timecourse
updated 9.9 years ago by 1.6k • written 9.9 years ago by • 0
1
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3
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Discrepancy in gene set size between gage() and geneData()
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9.9 years ago serpalma.v ▴ 60
0
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Can't login to MG-RAST from mmnet
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9.9 years ago lptolik • 0
3
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1
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1.1k
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passing submitJobs parameters from BatchJobsParam
biocparallel
updated 9.9 years ago by 25k • written 9.9 years ago by ★ 1.9k
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genotype function from crlmm package creates next error "Error in quantile.default(M, c(1, 5)/6, names = FALSE) : missing values and NaN's not allowe…
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9.9 years ago IOM ▴ 20
0
votes
5
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9.3k
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how to analyze TCGA CNV data
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updated 9.9 years ago by • 0 • written 10.8 years ago by ▴ 20
0
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1
reply
3.0k
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DESeq2 RNA analysis work flow with NCBI GEO data
deseq2
updated 9.9 years ago by ▴ 370 • written 9.9 years ago by ▴ 10
0
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7
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2.7k
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Multithreading CopywriteR on SLURM cluster
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updated 9.9 years ago by ▴ 170 • written 9.9 years ago by • 0
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2
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[SOLVED] BUG REPORT: Ubuntu 14.04 xps Installation libcrypto.so.10
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updated 9.9 years ago by ★ 3.9k • written 9.9 years ago by ▴ 110
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12
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6.2k
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remove batch effect using limma
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updated 9.9 years ago by ★ 29k • written 9.9 years ago by • 0
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21
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ANOVA using edgeR
edger
9.9 years ago myprogramming2016 • 0
0
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2
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3.1k
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Problems opening cel files
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9.9 years ago ranjita_duttaroy • 0
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0
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illumina methylationEPIC 850k array
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9.9 years ago Brian Smith ▴ 120
0
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1
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1.8k
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CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter bin size targeted sequencing
updated 9.9 years ago by ▴ 170 • written 9.9 years ago by • 0
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7
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unexpected error when creating GRanges object by calling makeGRangesFromDataFrame()
r error handling granges
updated 9.9 years ago by 16k • written 9.9 years ago by ▴ 80
4
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7
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the design matrix in edgeR users Guide
edgeR
9.9 years ago yifan.mo • 0
0
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0
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1.3k
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rGADEM bit calloc error
rGADEM
9.9 years ago emiliomastriani • 0
0
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1
reply
1.4k
views
No reads with summarizeOverlaps
summarizeoverlaps rnaseq
9.9 years ago diogo.camacho.2008 • 0
4
votes
1
reply
1.5k
views
Select from Overlapping Genomic Ranges based on Score or other Metadata
genomicranges
updated 9.9 years ago by ★ 11k • written 9.9 years ago by ▴ 30
4
votes
12
replies
4.0k
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DESeq2 RNAseq analysis with "matrix not full rank" error corrected.
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9.9 years ago yifangt ▴ 20
9
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5
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Differential expression analysis: Permutation Test
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updated 2.1 years ago by 53k • written 9.9 years ago by ▴ 90
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1
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1.5k
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Warning message in Seqplots
seqplots
updated 9.9 years ago by • 0 • written 9.9 years ago by • 0
1
vote
1
reply
2.8k
views
edgeR GLM fitted values
edgeR GLM classification rnaseq
updated 9.9 years ago by ★ 29k • written 9.9 years ago by ▴ 10
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1
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1.5k
views
GEOmetadb urgent question!
R geometadb
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
0
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2
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2.1k
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readVcf error: Call2("new_XStringSet_from_CHARACTER", ans_class, ans_elementType, : key 42 (char '*') not in lookup table
VariantAnnotation
9.9 years ago rubi ▴ 110
3
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0
replies
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News: Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
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9.9 years ago Martin Morgan 25k
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5
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MEDIPS genome Vs createROIset significance issue
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9.9 years ago peter.mcerlean • 0
10
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3
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resize (shrink/expand) GenomicRanges
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updated 9.9 years ago by 16k • written 9.9 years ago by ▴ 40
0
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Microarray time-course clustering, using "hclust" in masigPro
clustering hclust maSigPro
updated 9.9 years ago by • 0 • written 10.4 years ago by ▴ 50
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3
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deltaCq error in package NormqPCR
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9.9 years ago jacorvar ▴ 40
0
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3
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neqc normalization results in bimodal histogram of expression values
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updated 9.9 years ago by 53k • written 9.9 years ago by ▴ 110
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Dealing with AN and Inf in a dataframe
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9.9 years ago Bernal-Mizrachi, Leon ▴ 50
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summaries featureCounts output for egeR
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updated 9.9 years ago by ★ 3.6k • written 9.9 years ago by • 0
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8
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Can't load DirichletMultinomial on R 3.3.0
DirichletMultinomial
updated 9.9 years ago by ★ 8.2k • written 9.9 years ago by • 0
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5
replies
3.1k
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getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 9.9 years ago by ▴ 20 • written 9.9 years ago by • 0
0
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2
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clustering analysis of illumina microarray gene expression data
clustering illumina microarray
9.9 years ago kritikamish99 ▴ 10
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votes
7
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How to create "trait data" file for WGCNA
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updated 9.9 years ago by ★ 3.0k • written 9.9 years ago by ▴ 20
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2
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UPC correction for GC content?
scan.upc upc_generic_expressionset upc
updated 9.9 years ago by ▴ 600 • written 9.9 years ago by • 0
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3
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question about correlation plots generated by Diffbind based on peak occupancy
diffbind
updated 9.9 years ago by ▴ 30 • written 9.9 years ago by • 0
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2
replies
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runSeqsumm not working
seqCNA
updated 9.9 years ago by • 0 • written 9.9 years ago by • 0
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2.9k
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In n1 * n2 : NAs produced by integer overflow
unifiedWMWqPCR
updated 9.9 years ago by • 0 • written 9.9 years ago by ▴ 10
0
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2
replies
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How to normalized SWATH proteomic data?
proteomics SWATH
updated 9.9 years ago by 1.6k • written 9.9 years ago by • 0
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1.4k
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Error using goseq function in bioconductor pkg goseq
goseq
updated 9.9 years ago by 53k • written 9.9 years ago by ▴ 10
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votes
2
replies
1.5k
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GenomicInteractions read in bedpe error
genomicinteractions GRanges
updated 9.9 years ago by ▴ 140 • written 9.9 years ago by ▴ 200
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votes
2
replies
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Restricting seqlevels to chr1-chr22, chrX, chrY in TxDb from UCSC returns more genes than without restriction
GenomicFeatures
updated 9.9 years ago by 25k • written 9.9 years ago by ▴ 10
6
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1
reply
2.1k
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select negative control probes with GEOquery
GEOquery MBCB limma
9.9 years ago goldberg.jm ▴ 10
3
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5
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IRanges start bigger than end
iranges
9.9 years ago vedran.franke • 0
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