0
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1
reply
1.2k
views
consensus peak counts
diffbind
updated 10.7 years ago by ★ 5.2k • written 10.7 years ago by ▴ 20
0
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2
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Turnaround for bioc-sync to join organization team for git-svn bridge?
git-svn bridge bioc-sync
10.7 years ago rcavalca ▴ 140
2
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1
reply
2.3k
views
PLINK features available in GWASTools?
gwastools
10.7 years ago Stephanie M. Gogarten ▴ 890
7
votes
8
replies
2.1k
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Where downloaded data are stored?
R
10.7 years ago Arman Shahrisa ▴ 20
0
votes
4
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7.6k
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ComBat: Error non-conformable arguments
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updated 10.7 years ago by 68k • written 10.7 years ago by • 0
2
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2
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2.2k
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Help with cummeRbund
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updated 10.7 years ago by ▴ 370 • written 10.7 years ago by • 0
0
votes
1
reply
1.2k
views
BitSeq getExpression (type=counts) - (why all 1 or higher)
BitSeq
updated 10.7 years ago by ▴ 50 • written 10.7 years ago by • 0
0
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0
replies
1.0k
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seqbias : Suitable sampling
seqbias rsamtools
10.7 years ago Kaj Chokeshaiusaha ▴ 70
0
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0
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1.4k
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Biclustering approach to make transcription modules for rna seq data
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10.7 years ago dhwani.dholakia • 0
0
votes
1
reply
1.6k
views
GO.db/GOSim bugged or my bad?
go.db software error bug
updated 10.7 years ago by 16k • written 10.7 years ago by ▴ 10
2
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2
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3.8k
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diffbind: exporting unique peak sets
diffbind
10.7 years ago ruka.setoguchi • 0
24
votes
12
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14k
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Nanostring analysis with limma
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updated 10.7 years ago by ▴ 20 • written 10.7 years ago by ▴ 370
2
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3
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3.4k
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Questions in limma about multifactorial design and possible batch effect correction
limma batcheffect batcheffectcorrection multiple factor design
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 840
0
votes
0
replies
1.1k
views
r3Cseq file name convention
r3Cseq
10.7 years ago felix.klein ▴ 150
0
votes
0
replies
1.3k
views
Meaning of the asterisks in illuminaHumanv4PROBEQUALITY grades?
illuminaHumanv4.db
10.7 years ago lombardo • 0
0
votes
2
replies
1.6k
views
MEDIPS: Any way to get more columns/data from MEDIPS.mergeFrames?
MEDIPS mergeFrames
updated 10.7 years ago by ▴ 570 • written 10.7 years ago by • 0
2
votes
2
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2.2k
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UCSC Genome, match accession (NM_#####) with actual gene name
ucsc gene set analysis genome annotation
updated 10.7 years ago by 68k • written 10.7 years ago by • 0
2
votes
2
replies
1.3k
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factorial linear modeling from DEseq2
deseq2 rnaseq differential gene expression
updated 10.7 years ago by ★ 13k • written 10.7 years ago by • 0
0
votes
2
replies
2.6k
views
makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures makeTxDbFromGFF
updated 10.7 years ago by 16k • written 10.7 years ago by • 0
3
votes
3
replies
3.1k
views
DESeq2: Different Dispersions for different sample groups
deseq2 estimatedispersions
updated 10.7 years ago by ★ 13k • written 10.7 years ago by ▴ 10
2
votes
4
replies
2.7k
views
Analysis of Affymetrix Mouse Gene 2.0 ST arrays
affymetrix limma filtering
updated 10.7 years ago by 68k • written 10.7 years ago by • 0
5
votes
16
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6.1k
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Exporting dba.count result as a data frame
diffbind
10.7 years ago mm2489 ▴ 20
0
votes
3
replies
2.1k
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ontoCAT getEFO error
ontoCAT ontologies EFO
10.7 years ago Lescai, Francesco ▴ 380
2
votes
6
replies
2.1k
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DiffBind for Allele-specific binding analysis
diffbind chipseq
updated 10.7 years ago by ★ 5.2k • written 10.7 years ago by ▴ 100
0
votes
1
reply
1.3k
views
DiffBind : out of range error in dba.count
diffbind
updated 10.7 years ago by ★ 5.2k • written 10.7 years ago by • 0
0
votes
3
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3.0k
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Difference between methods getEIC and rawEIC for xcmsRaw classes
xcms metabolomics
10.7 years ago Johannes Rainer ★ 2.1k
27
votes
21
replies
26k
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Mapping genome regions to gene symbols
tcga cnv gene symbol coordinate
updated 3.2 years ago by 68k • written 10.7 years ago by ▴ 60
0
votes
1
reply
1.8k
views
intansv: error reading delly output into R
delly SV intansv
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ▴ 190
2
votes
3
replies
2.7k
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EdgeR design problem (genotype+treatment+time)
edger
10.7 years ago melissawong • 0
0
votes
1
reply
2.8k
views
Error while trying to upgrade R to version 3.2
bioconductor upgrade installr Windows8 R 3.2
10.7 years ago svlachavas ▴ 840
0
votes
4
replies
2.3k
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Faulty entry in org.Hs.eg.db, a force check perhaps?
org.Hs.eg.db
10.7 years ago Dan Du ▴ 210
1
vote
2
replies
1.7k
views
Journal articles for whole exome sequencing
exomecopy exon array analysis CODEX
10.7 years ago kaushal Raj Chaudhary ▴ 10
6
votes
3
replies
4.0k
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Normalization of RNA-seq data, called remove unwanted variation (RUV), in DESeq2
normalization deseq2 rnaseq
10.7 years ago Silva • 0
0
votes
1
reply
1.5k
views
DESeq: all the padjs equals to 1
deseq
updated 10.7 years ago by 43k • written 10.7 years ago by • 0
1
vote
3
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5.4k
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deseq: all padj values equal to 1
deseq padj
updated 10.7 years ago by 43k • written 11.0 years ago by • 0
0
votes
2
replies
1.4k
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about tracks() in ggbio
ggbio
10.7 years ago Bogdan ▴ 670
1
vote
1
reply
1.9k
views
Visualizing Structural variants
visualization SV
updated 10.7 years ago by 6.7k • written 10.7 years ago by ▴ 190
1
vote
2
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2.2k
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qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 10.7 years ago by 53k • written 10.7 years ago by ▴ 450
0
votes
0
replies
1.9k
views
Problems importing (new) LightCycler data to HTqPCR
htqpcr dataimport
10.7 years ago H.H. • 0
3
votes
3
replies
1.9k
views
edgeR: effect of adding background reads
edger
updated 10.7 years ago by 53k • written 10.7 years ago by ▴ 100
2
votes
2
replies
7.4k
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R 3.2.0 problem with DESeq2 - Hmisc error
deseq2 r software error
updated 10.7 years ago by ★ 13k • written 10.7 years ago by ▴ 20
3
votes
2
replies
2.3k
views
Subset SummarizedExperiment/GRangesList by seqnames
genomicranges
updated 10.7 years ago by ▴ 70 • written 10.7 years ago by 43k
0
votes
3
replies
1.5k
views
how to include System Call Results in Sweave PDF report ?
Sweave rstudio
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ▴ 10
6
votes
4
replies
3.4k
views
discrepance in DESeq2 results with different design structures
deseq2 differential expression independent filtering pre-filtering design matrix
10.7 years ago Assa Yeroslaviz ★ 1.5k
0
votes
4
replies
2.1k
views
DESeq2 design matrix for normal & enriched samples
deseq2 multiple factor design
updated 10.7 years ago by 43k • written 10.7 years ago by • 0
2
votes
5
replies
2.4k
views
ShortRead trim sequence at specific position
shortread fastq
10.8 years ago • updated 10.7 years ago danova_fr ▴ 20
0
votes
1
reply
3.4k
views
CanceR: Survival plots
cancer gui survival Kaplan-Meier
10.8 years ago • updated 10.7 years ago kmezhoud ▴ 10
0
votes
4
replies
2.4k
views
Question: DESeq2 nested design, multifactor test
deseq2 experimental design
10.7 years ago Shucong Li ▴ 60
1
vote
13
replies
2.5k
views
edgeR data analysis question
edger limma
updated 10.7 years ago by 53k • written 10.7 years ago by ▴ 10
0
votes
0
replies
1.7k
views
baySeq missing data
bayseq missing data
10.7 years ago k.w.lau • 0
46,725 results • Page 459 of 935
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@gordonsmyth Noted, thank you very much.
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